Browse Element(s) Details


Os.52934.1.S1_at

Description gb:AK069993.1
DB_XREF= gi:32980017
TID=Os.52934.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52934 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039E01, full insert sequence.
FL= gb:AK069993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1440011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14370Os.26592.1.S2_at11/116+8010878..8013835ABA-induced protein, putative, expressed
LOC_Os06g14379NANA6+8018008..8018908hypothetical protein
LOC_Os06g14390Os.9690.1.S1_at11/116+8030892..8034244oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g14400Os.52934.1.S1_at11/116+8037377..8040832oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g14406Os.50615.1.S1_at11/116+8043850..8048980chromatin remodeling protein, putative, expressed
LOC_Os06g14412Os.28431.1.S1_at11/116+8054255..8066365expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52934.1.S1_at--829--1951Chr06:8039940..8039964 (25 bp)
ACTGGGTGGATACCAAGCCTGTGCC
LOC_Os06g14400
Os.52934.1.S1_at--348--3891Chr06:8039922..8039946 (25 bp)
CTGTGCCTGGCGCTCTTGTGATCAA
LOC_Os06g14400
Os.52934.1.S1_at--284--6211Chr06:8037804..8037828 (25 bp)
GAGGCGACTCTGTTTTTTATGGACC
LOC_Os06g14400
Os.52934.1.S1_at--909--71Chr06:8037779..8037803 (25 bp)
ATTGCCAGATCTGATTTCTTCGGGA
LOC_Os06g14400
Os.52934.1.S1_at--974--5991Chr06:8037696..8037720 (25 bp)
GAGACCTTGCGAGCAAAGCTCTCAT
LOC_Os06g14400
Os.52934.1.S1_at--1060--5131Chr06:8037684..8037708 (25 bp)
GCAAAGCTCTCATCGAGCACTTCAA
LOC_Os06g14400
Os.52934.1.S1_at--721--2391Chr06:8037621..8037645 (25 bp)
AAACTTCTGTGAACTTTGTAGATGT
LOC_Os06g14400
Os.52934.1.S1_at--387--6631Chr06:8037578..8037602 (25 bp)
GTTGGTGTTCTACTTCTTAATCATA
LOC_Os06g14400
Os.52934.1.S1_at--200--1691Chr06:8037551..8037575 (25 bp)
AGCCTCATAGAGTGTTCTTCAAATA
LOC_Os06g14400
Os.52934.1.S1_at--492--2531Chr06:8037503..8037527 (25 bp)
AACTACATTGATGCCGTTGCCGATA
LOC_Os06g14400
Os.52934.1.S1_at--18--4511Chr06:8037491..8037515 (25 bp)
GCCGTTGCCGATAATGTAATGCCAT
LOC_Os06g14400
Target Sequence 
ACTGGGTGGATACCAAGCCTGTGCCTGGCGCTCTTGTGATCAATGTCGGGGACCTATTGCAGATCATGTCTAATGATAAG
TACAAGAGTGTGGAACACCGGGTAGTAATGAAGTCGCATGAAGAAGCCAGAGTTTCAAGCGCCATCTTTTACAATCCTGG
CAAGAGAGGCGACTCTGTTTTTTATGGACCATTGCCAGATCTGATTTCTTCGGGAAACCCACCAAAGTACAGGAATTTTA
CTATGTCTGAGTTTCTGGGGGCCTTCTTTAAACGAGACCTTGCGAGCAAAGCTCTCATCGAGCACTTCAAAATATAAAGT
TATTCAAATGTTGCAGATAAAAAGGTTTAAACTTCTGTGAACTTTGTAGATGTCGATACTGATAGTGTGATGTTGGTGTT
CTACTTCTTAATCATAAAAGCCTCATAGAGTGTTCTTCAAATAGATAAAAGGTTTAAACTTCTATAAACTACATTGATGC
CGTTGCCGATAATGTAATGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis