Browse Element(s) Details


Os.28431.1.S1_at

Description gb:AK066536.1
DB_XREF= gi:32976554
TID=Os.28431.1
CNT=54
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.28431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070H05, full insert sequence.
FL= gb:AK066536.1 gb:AK060815.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1441211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14390Os.9690.1.S1_at11/116+8030892..8034244oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g14400Os.52934.1.S1_at11/116+8037377..8040832oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g14406Os.50615.1.S1_at11/116+8043850..8048980chromatin remodeling protein, putative, expressed
LOC_Os06g14412Os.28431.1.S1_at11/116+8054255..8066365expressed protein
LOC_Os06g14420Os.27969.1.S1_at7/116+8068205..8068984hydrolase, NUDIX family protein, expressed
LOC_Os06g14430Os.40360.1.S1_x_at1/116+8073981..8075942hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0016585cellular_componentchromatin remodeling complex
GO:0003682molecular_functionchromatin binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28431.1.S1_at--270--2831Chr06:8065661..8065685 (25 bp)
AAGTTACGTGTGACGCTTCTGTTCC
LOC_Os06g14412
Os.28431.1.S1_at--291--3871Chr06:8065679..8065703 (25 bp)
CTGTTCCTGTTTCTGAAAGCTCTAT
LOC_Os06g14412
Os.28431.1.S1_at--909--2271Chr06:8065712..8065736 (25 bp)
AAATCGGTACATCGCCTGAGTGTGA
LOC_Os06g14412
Os.28431.1.S1_at--966--6451Chr06:8065741..8065765 (25 bp)
GATCAAGTGGCTACAGCAGCACCTC
LOC_Os06g14412
Os.28431.1.S1_at--407--1691Chr06:8065770..8065794 (25 bp)
ACCAACGCCATTATCTGATGCTACT
LOC_Os06g14412
Os.28431.1.S1_at--69--3871Chr06:8065784..8065808 (25 bp)
CTGATGCTACTGATGTATCTGCTGA
LOC_Os06g14412
Os.28431.1.S1_at--6--6911Chr06:8065798..8065822 (25 bp)
GTATCTGCTGATGTGCAAATCCCAG
LOC_Os06g14412
Os.28431.1.S1_at--744--4831Chr06:8065842..8065866 (25 bp)
GCTAGAGCAGCCGAACGAAACGACT
LOC_Os06g14412
Os.28431.1.S1_at--108--4251Chr06:8065870..8065894 (25 bp)
CCGTCGGGTGCTGCTACTGAAGAAA
LOC_Os06g14412
Os.28431.1.S1_at--640--4571Chr06:8066092..8066116 (25 bp)
GCGCTGAGCCAGCATCTGTAAGTGA
LOC_Os06g14412
Os.28431.1.S1_at--363--9931Chr06:8066162..8066186 (25 bp)
TACTGGGCCAGAGGATACAGCGGAC
LOC_Os06g14412
Target Sequence 
AAGTTACGTGTGACGCTTCTGTTCCTGTTTCTGAAAGCTCTATATCAAAGGAAATCGGTACATCGCCTGAGTGTGATGAT
GATCAAGTGGCTACAGCAGCACCTCATCCACCAACGCCATTATCTGATGCTACTGATGTATCTGCTGATGTGCAAATCCC
AGCAGGAATATCGGAGGCAAAGCTAGAGCAGCCGAACGAAACGACTAGCCCGTCGGGTGCTGCTACTGAAGAAAATAATA
CTGTCGTGAGCACTCAGATTCCAACATTAGCTGAATCAGAAGATAGAACACCCGCCGATACTGCTNTTCAAGGTACTGAG
GTTGACAGCGCTGAGCCAGCATCTGTAAGTGATGACGAAAACAAGGTTACAGCAGCTGATGATAGTGCACTCCCGTCTAC
TGGGCCAGAGGATACAGCGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis