Browse Element(s) Details


Os.27969.1.S1_at

Description gb:AK064894.1
DB_XREF= gi:32974912
TID=Os.27969.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27969 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000K23, full insert sequence.
FL= gb:AK064894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g144207/11hydrolase, NUDIX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14406Os.50615.1.S1_at11/116+8043850..8048980chromatin remodeling protein, putative, expressed
LOC_Os06g14412Os.28431.1.S1_at11/116+8054255..8066365expressed protein
LOC_Os06g14420Os.27969.1.S1_at7/116+8068205..8068984hydrolase, NUDIX family protein, expressed
LOC_Os06g14430Os.40360.1.S1_x_at1/116+8073981..8075942hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27969.1.S1_at--712--3911Chr06:8068647..8068671 (25 bp)
CTGGACGAGTCCGTGGACGAGGCGG
LOC_Os06g14420
Os.27969.1.S1_at--509--1791Chr06:8068535..8068559 (25 bp)
ACGCCACCTACGAGGGCTTCGTCTT
LOC_Os06g14420
Os.27969.1.S1_at--1137--4411Chr06:8068431..8068455 (25 bp)
GCCATGGACCGGTGCCCGCACTGGT
LOC_Os06g14420
Os.27969.1.S1_at--767--7291Chr06:8068420..8068444 (25 bp)
GTGCCCGCACTGGTGGATGCGCGAG
LOC_Os06g14420
Os.27969.1.S1_at--973--4571NONE
GCGCTGTCCCTCTTGTAGACGGCGG
NONE
Os.27969.1.S1_at--400--8711NONE
TGTCCCTCTTGTAGACGGCGGCGCC
NONE
Os.27969.1.S1_at--1037--111NONE
ATTAATTTGAAATCTCATGGGTCAC
NONE
Os.27969.1.S1_at--252--5591NONE
GAAATCTCATGGGTCACAACTCACA
NONE
Os.27969.1.S1_at--112--3271Chr06:8068277..8068297 (21 bp)
CAACTCACAAGAGATTCGGCCATGT
LOC_Os06g14420
Os.27969.1.S1_at--353--3751Chr06:8068274..8068297 (24 bp)
CTCACAAGAGATTCGGCCATGTAAA
LOC_Os06g14420
Os.27969.1.S1_at--514--6571Chr06:8068265..8068289 (25 bp)
GATTCGGCCATGTAAATCTCACCCT
LOC_Os06g14420
Target Sequence 
CTGGACGAGTCCGTGGACGAGGCGGCGCGGCGGGAGGCCCTGGAGGAGGCCGGGGTGCTCGGCGAGATCGGCGCCTCGCT
GGGGCGCTGGTGCTACCGGAGCCGCCGCTACGACGCCACCTACGAGGGCTTCGTCTTCCCGCTCCGGGTCACCGACGAGC
TCGACCGGTGGCCGGAGATGGCGGCCAGGCGCCGCAGCTGGGTCTCCCCGCAGCAGGCCATGGACCGGTGCCCGCACTGG
TGGATGCGCGAGGCCCTCCAGCGATTCGCCGACCTCTTCCCCCAATCCACGGCGCTGTCCCTCTTGTAGACGGCGGCGCC
GGCGGCGAGTTCGCCGGAGTTGAGAGNGATGTAATTAATTTGAAATCTCATGGGTCACAACTCACAAGAGATTCGGCCAT
GTAAATCTCACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis