Browse Element(s) Details


Os.50615.1.S1_at

Description gb:AK122137.1
DB_XREF= gi:37991783
TID=Os.50615.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136B20, full insert sequence.
FL= gb:AK106539.1 gb:AK122137.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1440611/11chromatin remodeling protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14379NANA6+8018008..8018908hypothetical protein
LOC_Os06g14390Os.9690.1.S1_at11/116+8030892..8034244oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g14400Os.52934.1.S1_at11/116+8037377..8040832oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g14406Os.50615.1.S1_at11/116+8043850..8048980chromatin remodeling protein, putative, expressed
LOC_Os06g14412Os.28431.1.S1_at11/116+8054255..8066365expressed protein
LOC_Os06g14420Os.27969.1.S1_at7/116+8068205..8068984hydrolase, NUDIX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0016585cellular_componentchromatin remodeling complex
GO:0003682molecular_functionchromatin binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50615.1.S1_at--492--10051Chr06:8048061..8048085 (25 bp)
TAGTATGGAAGTTGGCCTCTTGGCC
LOC_Os06g14406
Os.50615.1.S1_at--105--6231Chr06:8048121..8048145 (25 bp)
GAGGCCTCATCATATGCCTGTTGAT
LOC_Os06g14406
Os.50615.1.S1_at--582--6451Chr06:8048173..8048197 (25 bp)
GATCAAACTCCTGAGACAGCTGGCA
LOC_Os06g14406
Os.50615.1.S1_at--381--6291Chr06:8048281..8048305 (25 bp)
GATGATTTACCATTATCTCCTCCGA
LOC_Os06g14406
Os.50615.1.S1_at--985--151Chr06:8048292..8048316 (25 bp)
ATTATCTCCTCCGAAGTACACAATG
LOC_Os06g14406
Os.50615.1.S1_at--1007--5951Chr06:8048400..8048424 (25 bp)
GAGAATTTCAGCATCCTATGAGAAG
LOC_Os06g14406
Os.50615.1.S1_at--37--6751Chr06:8048696..8048720 (25 bp)
GTTCATCGGAGGATCTTTCTGCAAA
LOC_Os06g14406
Os.50615.1.S1_at--432--2511Chr06:8048753..8048777 (25 bp)
AACTTCTCCAACTTCAACGTCGTGT
LOC_Os06g14406
Os.50615.1.S1_at--446--1891Chr06:8048769..8048895 (25 bp)
ACGTCGTGTGCGCAGTGAATTTTTG
LOC_Os06g14406
Os.50615.1.S1_at--937--10271Chr06:8048892..8048916 (25 bp)
TTTGCAGGACTTTTTCAAGCCTAAT
LOC_Os06g14406
Os.50615.1.S1_at--713--3091Chr06:8048914..8048938 (25 bp)
AATACTACTGATTTGGACCGCATAA
LOC_Os06g14406
Target Sequence 
TAGTATGGAAGTTGGCCTCTTGGCCAAAGATGAAGTGTCCAAAGAACCATTTGCAGTTTTGAGGCCTCATCATATGCCTG
TTGATGGTAGCAACCACAATTTATCTGGAAAGGATCAAACTCCTGAGACAGCTGGCAATGAAATTGATAATGGTAGCCAC
ATGGGAGAGATGATATTTGAGCGATCTGCAGATGAAGGAGACGAAGATCTTTCTGAGCAAGATGATTTACCATTATCTCC
TCCGAAGTACACAATGACTGATAAATGGATTTTGGATCATCAGAAGAGAAGATATGAAGAAAACAAAAGGAAGGCATTAG
AGTTACAGAAGGCACACAGGAGAATTTCAGCATCCTATGAGAAGCTAAAGGAAAATGTTAGTTCATCGGAGGATCTTTCT
GCAAAAACAAAGAGTGACATTGAATTGAAAAAGCTTCAACTTCTCCAACTTCAACGTCGTGTGCGCAGTGAATTTTTGCA
GGACTTTTTCAAGCCTAATACTACTGATTTGGACCGCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis