Browse Element(s) Details

OsAffx.27633.1.S1_at

Description

tigr:9634.m01425
TID=OsAffx.27633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g14280	11/11	33 kDa secretory protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g14240	Os.9950.1.S1_at	11/11	6	+	7939955..7940681	Hsp20/alpha crystallin family protein, expressed
LOC_Os06g14250	Os.35344.18.S1_x_at	10/11	6	+	7944053..7950099	transposon protein, putative, Mutator sub-class
LOC_Os06g14250	Os.35344.3.S1_x_at	9/11	6	+	7944053..7950099	transposon protein, putative, Mutator sub-class
LOC_Os06g14250	OsAffx.22940.5.S1_x_at	3/11	6	+	7944053..7950099	transposon protein, putative, Mutator sub-class
LOC_Os06g14260	Os.46882.1.S1_at	2/11	6	+	7952936..7955232	Protein kinase domain containing protein
LOC_Os06g14270	OsAffx.27632.1.S1_at	11/11	6	+	7959790..7960936	hypothetical protein
LOC_Os06g14280	OsAffx.27633.1.S1_at	11/11	6	+	7962962..7966745	33 kDa secretory protein, putative, expressed
LOC_Os06g14290	Os.35344.18.S1_x_at	10/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14290	Os.35344.3.S1_x_at	9/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14290	OsAffx.22940.5.S1_x_at	3/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14300	NA	NA	6	+	7978497..7980136	transposon protein, putative, unclassified
LOC_Os06g14310	OsAffx.15422.2.S1_at	11/11	6	+	7981085..7982860	cation channel family protein
LOC_Os06g14324	Os.10311.1.S1_a_at	11/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.10311.2.A1_s_at	10/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.10311.2.A1_x_at	9/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.24876.1.S1_s_at	5/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	OsAffx.14652.1.S1_at	1/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	OsAffx.27197.1.S1_at	1/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14340	OsAffx.15423.1.S1_at	11/11	6	+	7991023..7991745	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27633.1.S1_at--56--185	1	Chr06:7965821..7965845 (25 bp)	ACGCATATGGATTTGTGCCGCACAC	LOC_Os06g14280
OsAffx.27633.1.S1_at--869--511	1	Chr06:7965807..7965826 (20 bp)	GCACACGTACAGTGACCACGATGAA	LOC_Os06g14280
OsAffx.27633.1.S1_at--527--625	1	Chr06:7963340..7963364 (25 bp)	GATGGTCACCACTTAGCTCAGATTG	LOC_Os06g14280
OsAffx.27633.1.S1_at--511--7	1	Chr06:7963287..7963311 (25 bp)	ATTGCTTTGGTATCTCTCCTACACA	LOC_Os06g14280
OsAffx.27633.1.S1_at--606--381	1	Chr06:7963272..7963296 (25 bp)	CTCCTACACATCTCTTTTATCTTTT	LOC_Os06g14280
OsAffx.27633.1.S1_at--668--1015	1	Chr06:7963255..7963279 (25 bp)	TATCTTTTAGGGTCTCTTTTGTCGT	LOC_Os06g14280
OsAffx.27633.1.S1_at--270--955	1	Chr06:7963241..7963265 (25 bp)	TCTTTTGTCGTCTCATTATGGGCCA	LOC_Os06g14280
OsAffx.27633.1.S1_at--141--543	1	Chr06:7963206..7963230 (25 bp)	GAAGCCATGCCGAAATGACCTACGC	LOC_Os06g14280
OsAffx.27633.1.S1_at--5--893	1	Chr06:7963191..7963215 (25 bp)	TGACCTACGCTGAAAGGGAGCCACT	LOC_Os06g14280
OsAffx.27633.1.S1_at--1097--899	1	Chr06:7963150..7963174 (25 bp)	TGAAGATTCCAGCTGCTACCTGCAA	LOC_Os06g14280
OsAffx.27633.1.S1_at--980--485	1	Chr06:7963136..7963160 (25 bp)	GCTACCTGCAACTAGCCACTAAGGA	LOC_Os06g14280

Target Sequence

ACGCATATGGATTTGTGCCGCACACGTACAGTGACCACGATGAATCTGGGAAAACACTTGCAATCATCATCGGCCTCGTC
GCGGCTGTCGCCCTCGTCATCGTCTTCCTCTCCTTCGTCAGAAGAGCCGGCGGTGTCGGTGGCAAAAGCTAAGGGTGAGC
AGGATGGTCACCACTTAGCTCAGATTGGATCGGTCGGTGTGGCTTTTTCTTGGGCATTGCTTTGGTATCTCTCCTACACA
TCTCTTTTATCTTTTAGGGTCTCTTTTGTCGTCTCATTATGGGCCAAAACAAAGAGGAAGCCATGCCGAAATGACCTACG
CTGAAAGGGAGCCACTGTGCTGAAGTGTGAGGTGAAGATTCCAGCTGCTACCTGCAACTAGCCACTAAGGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis