Browse Element(s) Details


OsAffx.15422.1.S1_at

Description tigr:9632.m00178
TID=OsAffx.15422.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cation channel family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0272011/11cation channel family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02680Os.10878.1.S1_at11/114+1002457..1006786expressed protein
LOC_Os04g02690Os.56328.1.S1_x_at11/114+1011224..1013431Sec7 domain containing protein, expressed
LOC_Os04g02700Os.31312.5.S1_x_at4/114+1016884..1020185retrotransposon protein, putative, unclassified
LOC_Os04g02700Os.31312.2.S1_x_at2/114+1016884..1020185retrotransposon protein, putative, unclassified
LOC_Os04g02710OsAffx.22492.1.S1_at1/114+1020814..1026969retrotransposon protein, putative, unclassified
LOC_Os04g02710OsAffx.22492.1.S1_x_at1/114+1020814..1026969retrotransposon protein, putative, unclassified
LOC_Os04g02720OsAffx.15422.1.S1_at11/114+1029779..1032035cation channel family protein
LOC_Os04g02720OsAffx.15422.2.S1_at1/114+1029779..1032035cation channel family protein
LOC_Os04g02730Os.7618.1.S1_at11/114+1033994..1041090dihydrouridine synthase family protein, putative, expressed
LOC_Os04g02730OsAffx.8934.1.S1_x_at1/114+1033994..1041090dihydrouridine synthase family protein, putative, expressed
LOC_Os04g02754Os.14965.1.S1_at10/114+1041720..1058003Amidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0005886cellular_componentplasma membrane
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15422.1.S1_at--152--1931Chr04:1030805..1030829 (25 bp)
ACGGTCGGCTATGGCGACCTGCATG
LOC_Os04g02720
OsAffx.15422.1.S1_at--232--8311Chr04:1030811..1030835 (25 bp)
GGCTATGGCGACCTGCATGCCACCA
LOC_Os04g02720
OsAffx.15422.1.S1_at--869--3451Chr04:1031049..1031073 (25 bp)
CAGTGGGTATCGGAGTTCGGGAGCA
LOC_Os04g02720
OsAffx.15422.1.S1_at--538--5131Chr04:1031102..1031126 (25 bp)
GCAAATGTTGGCCAACGGGCAGCTC
LOC_Os04g02720
OsAffx.15422.1.S1_at--747--2291Chr04:1031104..1031128 (25 bp)
AAATGTTGGCCAACGGGCAGCTCAG
LOC_Os04g02720
OsAffx.15422.1.S1_at--793--71Chr04:1031749..1031773 (25 bp)
ATTCCACAGCCATTCACCATTCGGA
LOC_Os04g02720
OsAffx.15422.1.S1_at--1124--2151Chr04:1031754..1031778 (25 bp)
ACAGCCATTCACCATTCGGAGCAGG
LOC_Os04g02720
OsAffx.15422.1.S1_at--499--9191Chr04:1031863..1031887 (25 bp)
TCCAATTTTATTCTGGTATCCGATT
LOC_Os04g02720
OsAffx.15422.1.S1_at--792--10351Chr04:1031869..1031893 (25 bp)
TTTATTCTGGTATCCGATTTTGTGG
LOC_Os04g02720
OsAffx.15422.1.S1_at--224--10131Chr04:1031879..1031983 (25 bp)
TATCCGATTTTGTGGAATACCTTGA
LOC_Os04g02720
OsAffx.15422.1.S1_at--805--10391Chr04:1031886..1031990 (25 bp)
TTTTGTGGAATACCTTGAGTCTCTG
LOC_Os04g02720
Target Sequence 
ACGGTCGGCTATGGCGACCTGCATGCCACCAACATCGGCGAGATGCTGTTCAGCATAGCCTTCATGCTCTTCAACATGGG
CCTCACATCCTACATCATCGGCAACATCACCAACCTCGTTGTTCGTGAAACCTCCAACACCTTCAAGATGAGGGACATGG
TGCAGTGGGTATCGGAGTTCGGGAGCATGAACCGGCTGCCAGAGGTGATGAGGGAGCAAATGTTGGCCAACGGGCAGCTC
AGGTTCAGGACAAAGGAGCAGCTGCAGCATGAGCATGTGAAGAGAATAGGACCTCGGGGCATGGTAGGGGAAATTGGAGT
GATGTTCAGCATTCCACAGCCATTCACCATTCGGAGCAGGAGGCTCACCCAGGTTGTCCGCATAAGCCACATCCATCTGC
TCCAGGCTGTCCGGCCTAACACCGCAGATGGGTGCATCGTGTTCTCCAATTTTATTCTGGTATCCGATTTTGTGGAATAC
CTTGAGTCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis