Browse Element(s) Details


Os.56328.1.S1_x_at

Description gb:AK109864.1
DB_XREF= gi:32995073
TID=Os.56328.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56328 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-H09, full insert sequence.
FL= gb:AK109864.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0269011/11Sec7 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02640Os.50130.1.S1_at11/114+984396..986229Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g02650OsAffx.25842.1.S1_at11/114+986975..989473expressed protein
LOC_Os04g02660OsAffx.16092.2.A1_at10/114+991080..992897hypothetical protein
LOC_Os04g02670NANA4+995453..997163hypothetical protein
LOC_Os04g02680Os.10878.1.S1_at11/114+1002457..1006786expressed protein
LOC_Os04g02690Os.56328.1.S1_x_at11/114+1011224..1013431Sec7 domain containing protein, expressed
LOC_Os04g02700Os.31312.5.S1_x_at4/114+1016884..1020185retrotransposon protein, putative, unclassified
LOC_Os04g02700Os.31312.2.S1_x_at2/114+1016884..1020185retrotransposon protein, putative, unclassified
LOC_Os04g02710OsAffx.22492.1.S1_at1/114+1020814..1026969retrotransposon protein, putative, unclassified
LOC_Os04g02710OsAffx.22492.1.S1_x_at1/114+1020814..1026969retrotransposon protein, putative, unclassified
LOC_Os04g02720OsAffx.15422.1.S1_at11/114+1029779..1032035cation channel family protein
LOC_Os04g02720OsAffx.15422.2.S1_at1/114+1029779..1032035cation channel family protein
LOC_Os04g02730Os.7618.1.S1_at11/114+1033994..1041090dihydrouridine synthase family protein, putative, expressed
LOC_Os04g02730OsAffx.8934.1.S1_x_at1/114+1033994..1041090dihydrouridine synthase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0007047biological_processcell wall organization and biogenesis
GO:0007155biological_processcell adhesion
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009880biological_processembryonic pattern specification
GO:0009942biological_processlongitudinal axis specification
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56328.1.S1_x_at--815--5411Chr04:1011764..1011788 (25 bp)
GAACCACTACAACCGCGACGAGAAG
LOC_Os04g02690
Os.56328.1.S1_x_at--1145--7991Chr04:1011735..1011759 (25 bp)
GGATGGAGTACCTCCGGCTGAGCCA
LOC_Os04g02690
Os.56328.1.S1_x_at--962--2211Chr04:1011639..1011663 (25 bp)
ACAAGATCGGCGAGCTCCTGGGCGA
LOC_Os04g02690
Os.56328.1.S1_x_at--502--1211Chr04:1011582..1011606 (25 bp)
AGTTCACGGAGACGTTCGACTTCAC
LOC_Os04g02690
Os.56328.1.S1_x_at--812--331Chr04:1011487..1011511 (25 bp)
ATACAGCGGATCCTGGAGGCGTTCT
LOC_Os04g02690
Os.56328.1.S1_x_at--403--1331Chr04:1011459..1011483 (25 bp)
AGAGGTTCTACGAGCAGCAGACGGC
LOC_Os04g02690
Os.56328.1.S1_x_at--130--1391Chr04:1011441..1011465 (25 bp)
AGACGGCGGAGGTGTTCGCCACCAA
LOC_Os04g02690
Os.56328.1.S1_x_at--542--7352Chr06:1615738..1615878 (25 bp)
GTGCAAGTGGGCTTGTCCGCAAACC
NONE
Os.56328.1.S1_x_at--825--9292Chr11:15100200..15100221 (22 bp)
TCCGCAAACCCGCTTATAGACAAAA
NONE
Os.56328.1.S1_x_at--696--10051Chr04:1011305..1011329 (25 bp)
TAGTACGATTTGACCAGCGAGTTAT
LOC_Os04g02690
Os.56328.1.S1_x_at--577--7971Chr04:1011251..1011275 (25 bp)
GGATCGACCCACTTGTATATCTAAA
LOC_Os04g02690
Target Sequence 
GAACCACTACAACCGCGACGAGAAGAAGGGGATGGAGTACCTCCGGCTGAGCCAGCTGGTGCCCACCCCGCCGGAGCCCC
GGAGCATGGCCTTCTTCCTCCGCTACTCGCCGGGGCTGGACAAGAACAAGATCGGCGAGCTCCTGGGCGACCCGGAGGAG
CAGAGCCTGAGGGTGCTCAAGGAGTTCACGGAGACGTTCGACTTCACCGGCGTGATCCTGGACACGGCGCTGCGCACCTA
CCTGGAGACGTTCCGCCTCCCCGGCGAGTCGCAGAAGATACAGCGGATCCTGGAGGCGTTCTCGGAGAGGTTCTACGAGC
AGCAGACGGCGGAGGTGTTCGCCACCAAGGACGCCGCCTTCATCCTCTGCTACTCCCTCATCATGCTCAACACCGATCTC
CACAACCCACAAGTAGGGGTGCAAGTGGGCTTGTCCGCAAACCCGCTTATAGACAAAATTAGTACGATTTGACCAGCGAG
TTATCTATTAATTTGACATATTAATATGTTTATGGATCGACCCACTTGTATATCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56328.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis