Browse Element(s) Details


OsAffx.25842.1.S1_at

Description tigr:9632.m00170
TID=OsAffx.25842.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0265011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02600OsAffx.15220.2.S1_s_at5/114+961396..966134retrotransposon protein, putative, LINE subclass
LOC_Os04g02600OsAffx.15220.1.S1_s_at4/114+961396..966134retrotransposon protein, putative, LINE subclass
LOC_Os04g02600Os.13877.1.S1_at1/114+961396..966134retrotransposon protein, putative, LINE subclass
LOC_Os04g02610NANA4+967480..967680hypothetical protein
LOC_Os04g02620Os.27281.1.S1_at11/114+971635..974161oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g02630OsAffx.13625.1.S1_at11/114+977818..979615hypothetical protein
LOC_Os04g02640Os.50130.1.S1_at11/114+984396..986229Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g02650OsAffx.25842.1.S1_at11/114+986975..989473expressed protein
LOC_Os04g02660OsAffx.16092.2.A1_at10/114+991080..992897hypothetical protein
LOC_Os04g02670NANA4+995453..997163hypothetical protein
LOC_Os04g02680Os.10878.1.S1_at11/114+1002457..1006786expressed protein
LOC_Os04g02690Os.56328.1.S1_x_at11/114+1011224..1013431Sec7 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25842.1.S1_at--687--1571Chr04:987468..987492 (25 bp)
AGCTCAAGGCACGAGACAACGAAGA
LOC_Os04g02650
OsAffx.25842.1.S1_at--745--931Chr04:987462..987486 (25 bp)
AGGCACGAGACAACGAAGACGACGA
LOC_Os04g02650
OsAffx.25842.1.S1_at--551--4511Chr04:987245..987269 (25 bp)
GCCGACCGTAGCATCAGCGGCGTAC
LOC_Os04g02650
OsAffx.25842.1.S1_at--765--7391Chr04:987193..987217 (25 bp)
GTGATGGAGCCGCATCACCATCGTC
LOC_Os04g02650
OsAffx.25842.1.S1_at--701--8871Chr04:987192..987216 (25 bp)
TGATGGAGCCGCATCACCATCGTCC
LOC_Os04g02650
OsAffx.25842.1.S1_at--820--4111Chr04:987156..987180 (25 bp)
CGCTGTACCGCGAGGTGAGGTTCCA
LOC_Os04g02650
OsAffx.25842.1.S1_at--279--931Chr04:987130..987154 (25 bp)
AGGCAGATGTCGGCCGGGCACGAGG
LOC_Os04g02650
OsAffx.25842.1.S1_at--743--5372Chr07:25165406..25165561 (25 bp)
GAAGAAGCCGCTGATCCCGCTGGTT
NONE
OsAffx.25842.1.S1_at--216--1451Chr04:987057..987081 (25 bp)
AGAAGCCGCTGATCCCGCTGGTTGG
LOC_Os04g02650
OsAffx.25842.1.S1_at--882--8571Chr04:987039..987063 (25 bp)
TGGTTGGCGCGCTCTTCATGAGGAA
LOC_Os04g02650
OsAffx.25842.1.S1_at--498--6611Chr04:987037..987061 (25 bp)
GTTGGCGCGCTCTTCATGAGGAAGA
LOC_Os04g02650
Target Sequence 
AGCTCAAGGCACGAGACAACGAAGACGACGACGGCGGCGGCGAGGCGGCCGCCAAGGTGATCGACCTGCAGGTGGAGGAT
CTCAAGTTCGTCGAGATCGACGACGACAAGCCACAGCCGCGCCGACAGTCGCCGTCGACGACGGTGACGGCGGCGGCGGC
GGCGGCGGGGAGCGCGTCCCCCGGCGAATTCCAGAAGAGGAGGTACGTGACGTTCGCCGACCCGCCGACCGTAGCATCAG
CGGCGTACCGCGCGCCGCCATTGCCGGACGTGGTGGTGATGGAGCCGCATCACCATCGTCCCGCCGCGCCGCCGCTGTAC
CGCGAGGTGAGGTTCCAGAGGCAGATGTCGGCCGGGCACGAGGCGGTGAAGGTGGCGGCGGCGGCGGAGCAGGAGGCGAG
GAAGAAGAAGAAGAAGCCGCTGATCCCGCTGGTTGGCGCGCTCTTCATGAGGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis