Browse Element(s) Details


Os.10878.1.S1_at

Description gb:AK107523.1
DB_XREF= gi:32992732
TID=Os.10878.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10878 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-F11, full insert sequence.
FL= gb:AK107523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0268011/11expressed protein
LOC_Os11g402101/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02630OsAffx.13625.1.S1_at11/114+977818..979615hypothetical protein
LOC_Os04g02640Os.50130.1.S1_at11/114+984396..986229Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g02650OsAffx.25842.1.S1_at11/114+986975..989473expressed protein
LOC_Os04g02660OsAffx.16092.2.A1_at10/114+991080..992897hypothetical protein
LOC_Os04g02670NANA4+995453..997163hypothetical protein
LOC_Os04g02680Os.10878.1.S1_at11/114+1002457..1006786expressed protein
LOC_Os04g02690Os.56328.1.S1_x_at11/114+1011224..1013431Sec7 domain containing protein, expressed
LOC_Os04g02700Os.31312.5.S1_x_at4/114+1016884..1020185retrotransposon protein, putative, unclassified
LOC_Os04g02700Os.31312.2.S1_x_at2/114+1016884..1020185retrotransposon protein, putative, unclassified
LOC_Os04g02710OsAffx.22492.1.S1_at1/114+1020814..1026969retrotransposon protein, putative, unclassified
LOC_Os04g02710OsAffx.22492.1.S1_x_at1/114+1020814..1026969retrotransposon protein, putative, unclassified
LOC_Os04g02720OsAffx.15422.1.S1_at11/114+1029779..1032035cation channel family protein
LOC_Os04g02720OsAffx.15422.2.S1_at1/114+1029779..1032035cation channel family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10878.1.S1_at--1135--9231Chr04:1002984..1003008 (25 bp)
TCCATAGCCACAAGCAGTCAGTTCC
LOC_Os04g02680
Os.10878.1.S1_at--263--971Chr04:1002941..1002965 (25 bp)
AGGAGCCAGCCACAGTAGGTCTGAT
LOC_Os04g02680
Os.10878.1.S1_at--703--7171Chr04:1002923..1002947 (25 bp)
GTCTGATATCCTGACTTGTGCAGCT
LOC_Os04g02680
Os.10878.1.S1_at--844--10431Chr04:1002824..1002848 (25 bp)
TTATGCTCCCAGTAGGTCATTGGTG
LOC_Os04g02680
Os.10878.1.S1_at--1001--7131Chr04:1002809..1002833 (25 bp)
GTCATTGGTGTGTTTGTAGCATACT
LOC_Os04g02680
Os.10878.1.S1_at--19--6971Chr04:1002794..1002818 (25 bp)
GTAGCATACTTGACGCAGCTCTTGA
LOC_Os04g02680
Os.10878.1.S1_at--194--10372Chr11:23483355..23483510 (25 bp)
TTTTTCTTCATCTTTTCCTTGTGGA
LOC_Os11g40210
Os.10878.1.S1_at--308--7371Chr04:1002671..1002695 (25 bp)
GTGAGAAATTTGTCGATGCCCCATA
LOC_Os04g02680
Os.10878.1.S1_at--795--6351Chr04:1002657..1002681 (25 bp)
GATGCCCCATAGTGTCAGATTGGCT
LOC_Os04g02680
Os.10878.1.S1_at--476--4931Chr04:1002635..1002659 (25 bp)
GCTTGATCTGAATGAGTTCTGCGTA
LOC_Os04g02680
Os.10878.1.S1_at--556--6891Chr04:1002531..1002555 (25 bp)
GTATCTCGTACATCGTTAACAACAT
LOC_Os04g02680
Target Sequence 
TCCATAGCCACAAGCAGTCAGTTCCCCCCAGGACCAGGTCACCAGGAGCCAGCCACAGTAGGTCTGATATCCTGACTTGT
GCAGCTGTTGATAGGGATTGTGGCANTGACAGTTGATGAGGCTAACCTTANTTCCCAGGAACTGCATCTGCATTGCNCCT
TTATGCTCCCAGTAGGTCATTGGTGTGTTTGTAGCATACTTGACGCAGCTCTTGAACAAAAAAAAAAAANGTAGGCTATG
TTAGAACGATTTTTTTCTTCATCTTTTCCTTGTGGAATGCGATGTGTATTATTTAGGCNCACACCCTTGGTGGTGAGAAA
TTTGTCGATGCCCCATAGTGTCAGATTGGCTTGATCTGAATGAGTTCTGCGTAAATTTTTTTTCCATTGTTCGNTGTATG
AACTCTGAATGNCAGGAGGCTATGTATTNNGTNGTGTATATATGTAATGTACGTATCTCGTACATCGTTAACAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis