Browse Element(s) Details


Os.50130.1.S1_at

Description gb:AK119922.1
DB_XREF= gi:37989545
TID=Os.50130.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-G08, full insert sequence.
FL= gb:AK119922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0264011/11Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02600OsAffx.15220.2.S1_s_at5/114+961396..966134retrotransposon protein, putative, LINE subclass
LOC_Os04g02600OsAffx.15220.1.S1_s_at4/114+961396..966134retrotransposon protein, putative, LINE subclass
LOC_Os04g02600Os.13877.1.S1_at1/114+961396..966134retrotransposon protein, putative, LINE subclass
LOC_Os04g02610NANA4+967480..967680hypothetical protein
LOC_Os04g02620Os.27281.1.S1_at11/114+971635..974161oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g02630OsAffx.13625.1.S1_at11/114+977818..979615hypothetical protein
LOC_Os04g02640Os.50130.1.S1_at11/114+984396..986229Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g02650OsAffx.25842.1.S1_at11/114+986975..989473expressed protein
LOC_Os04g02660OsAffx.16092.2.A1_at10/114+991080..992897hypothetical protein
LOC_Os04g02670NANA4+995453..997163hypothetical protein
LOC_Os04g02680Os.10878.1.S1_at11/114+1002457..1006786expressed protein
LOC_Os04g02690Os.56328.1.S1_x_at11/114+1011224..1013431Sec7 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0010025biological_processwax biosynthesis
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0016020cellular_componentmembrane
GO:0008415molecular_functionacyltransferase activity
GO:0009922molecular_functionfatty acid elongase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50130.1.S1_at--1151--2011Chr04:985535..985559 (25 bp)
ACTACTACCGGCCTGGATTTCACAG
LOC_Os04g02640
Os.50130.1.S1_at--737--6531Chr04:985550..985574 (25 bp)
GATTTCACAGGTTGTTCCAGCACTT
LOC_Os04g02640
Os.50130.1.S1_at--271--5071Chr04:985691..985715 (25 bp)
GCAGCTCGCTGCTGTATAGTACGAG
LOC_Os04g02640
Os.50130.1.S1_at--39--10071Chr04:985707..985731 (25 bp)
TAGTACGAGCTTGCGTACATCGAGG
LOC_Os04g02640
Os.50130.1.S1_at--887--7751Chr04:985752..985776 (25 bp)
GGTGATCGGGTGTGCATGATCTCCT
LOC_Os04g02640
Os.50130.1.S1_at--543--10531Chr04:985776..985800 (25 bp)
TTCAGCCCAGGTATCGACTGCAGCA
LOC_Os04g02640
Os.50130.1.S1_at--695--4011Chr04:985802..985826 (25 bp)
CGTCGTGTGGGAGTGCATCAAGCCA
LOC_Os04g02640
Os.50130.1.S1_at--528--7331Chr04:985814..985838 (25 bp)
GTGCATCAAGCCAACAGATCACCAC
LOC_Os04g02640
Os.50130.1.S1_at--538--4271Chr04:985878..985902 (25 bp)
CCTGTGCAGCTTCCCAAAATTGTCA
LOC_Os04g02640
Os.50130.1.S1_at--265--2931Chr04:985904..985928 (25 bp)
AAGGACTGCATAGTGCGCGCTGTTA
LOC_Os04g02640
Os.50130.1.S1_at--843--7291Chr04:985916..985940 (25 bp)
GTGCGCGCTGTTACTACTGCATGCA
LOC_Os04g02640
Target Sequence 
ACTACTACCGGCCTGGATTTCACAGGTTGTTCCAGCACTTCTGCATCCACCCGGGAGGGCGGAGGGTGCTCGACGAGGTG
CAGCGGGGGCTGGGGCTCACCGACGACGACATGGAGGCGTCGCACATGACGCTGCACCGGTTCGGGAACATGGCGAGCAG
CTCGCTGCTGTATAGTACGAGCTTGCGTACATCGAGGCCAAGGGGAGGATGAGGAAGGGTGATCGGGTGTGCATGATCTC
CTTCAGCCCAGGTATCGACTGCAGCAGCGTCGTGTGGGAGTGCATCAAGCCAACAGATCACCACCTCCACCATGGACCCT
GGGCCGCCTGCATCGACCGCTACCCTGTGCAGCTTCCCAAAATTGTCAAAAGGACTGCATAGTGCGCGCTGTTACTACTG
CATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis