Browse Element(s) Details


Os.7618.1.S1_at

Description gb:AK111699.1
DB_XREF= gi:37988362
TID=Os.7618.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023009K15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009K15, full insert sequence.
FL= gb:AK111699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0273011/11dihydrouridine synthase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02690Os.56328.1.S1_x_at11/114+1011224..1013431Sec7 domain containing protein, expressed
LOC_Os04g02700Os.31312.5.S1_x_at4/114+1016884..1020185retrotransposon protein, putative, unclassified
LOC_Os04g02700Os.31312.2.S1_x_at2/114+1016884..1020185retrotransposon protein, putative, unclassified
LOC_Os04g02710OsAffx.22492.1.S1_at1/114+1020814..1026969retrotransposon protein, putative, unclassified
LOC_Os04g02710OsAffx.22492.1.S1_x_at1/114+1020814..1026969retrotransposon protein, putative, unclassified
LOC_Os04g02720OsAffx.15422.1.S1_at11/114+1029779..1032035cation channel family protein
LOC_Os04g02720OsAffx.15422.2.S1_at1/114+1029779..1032035cation channel family protein
LOC_Os04g02730Os.7618.1.S1_at11/114+1033994..1041090dihydrouridine synthase family protein, putative, expressed
LOC_Os04g02730OsAffx.8934.1.S1_x_at1/114+1033994..1041090dihydrouridine synthase family protein, putative, expressed
LOC_Os04g02754Os.14965.1.S1_at10/114+1041720..1058003Amidase family protein, expressed
LOC_Os04g02780Os.9698.1.S1_at11/114+1060492..1063545amidase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7618.1.S1_at--1137--1771Chr04:1040403..1040427 (25 bp)
ACCGGTTGGCCTGTTGGATGTGATC
LOC_Os04g02730
Os.7618.1.S1_at--1150--771Chr04:1040420..1040444 (25 bp)
ATGTGATCCCGCAACGTTTGAACTG
LOC_Os04g02730
Os.7618.1.S1_at--222--3731Chr04:1040457..1040481 (25 bp)
CTACTGTGGCCGTGATGATCTTGAA
LOC_Os04g02730
Os.7618.1.S1_at--643--5551Chr04:1040479..1040503 (25 bp)
GAAACCCTAATGATCTCTGATTCAG
LOC_Os04g02730
Os.7618.1.S1_at--9--10351Chr04:1040655..1040679 (25 bp)
TTTACACCCAAGCACAAATCCAATG
LOC_Os04g02730
Os.7618.1.S1_at--297--2431Chr04:1040695..1040719 (25 bp)
AAAACGGCTAACACCATTCATCTCT
LOC_Os04g02730
Os.7618.1.S1_at--67--10551Chr04:1040711..1040735 (25 bp)
TTCATCTCTCTTCAAAGCTTGTGCC
LOC_Os04g02730
Os.7618.1.S1_at--1078--5891Chr04:1040744..1040768 (25 bp)
GAGCTCCATGCTGCCTGATAATGTT
LOC_Os04g02730
Os.7618.1.S1_at--410--9751Chr04:1040762..1040786 (25 bp)
TAATGTTTACTTGAACCGGCGGTGT
LOC_Os04g02730
Os.7618.1.S1_at--632--4971Chr04:1040796..1040820 (25 bp)
GCATGATTTTGCTTCACCCAAACGA
LOC_Os04g02730
Os.7618.1.S1_at--54--3431Chr04:1040957..1040981 (25 bp)
CGGTGAAAATTCTGTTCCCTCTATC
LOC_Os04g02730
Target Sequence 
ACCGGTTGGCCTGTTGGATGTGATCCCGCAACGTTTGAACTGGAGGCCCCCAAGCTACTGTGGCCGTGATGATCTTGAAA
CCCTAATGATCTCTGATTCAGCAGCTGACTGGATCAGGATCTCAGAGATGTTGCTTGGCAAAGTTCCAGAAGGGTTTACG
TTTACACCCAAGCACAAATCCAATGCTTATGATCGAGCTGAAAACGGCTAACACCATTCATCTCTCTTCAAAGCTTGTGC
CCAGCCNTTGGAGCTCCATGCTGCCTGATAATGTTTACTTGAACCGGCGGTGTAGGGGAGCAGCATGATTTTGCTTCACC
CAAACGACACAATTCATGTTTATTTAAACATAGAGAGCTGCTACTAGTAATATGTGATGAGGGAATTACCGTGACAAGGG
ATTATGACTCCCTTGGACCGCCAAAAGAAAANATCCGCTTCATTTCTGAAGGAATTTTTATTTCGGTGAAAATTCTGTTC
CCTCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis