Browse Element(s) Details


Os.11963.1.S2_at

Description gb:AK065035.1
DB_XREF= gi:32975053
TID=Os.11963.1
CNT=48
FEA=FLmRNA
TIER=FL+Stack
STK=22
UG=Os.11963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001H07, full insert sequence.
FL= gb:AK061898.1 gb:AK063189.1 gb:AK065035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0291011/11membrane related protein CP5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02870Os.18127.1.A1_at10/114+1107699..1112090Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os04g02880Os.36969.1.S1_at4/114+1113164..1113561expressed protein
LOC_Os04g02890Os.27457.1.S1_at11/114+1115814..1121887expressed protein
LOC_Os04g02890Os.27807.2.S1_a_at11/114+1115814..1121887expressed protein
LOC_Os04g02900Os.15076.1.S1_at11/114+1122969..1126811Pyruvate dehydrogenase E1 component alpha subunit, putative, expressed
LOC_Os04g02910Os.11963.1.S2_at11/114+1135888..1139302membrane related protein CP5, putative, expressed
LOC_Os04g02910Os.11963.1.S1_at11/114+1135888..1139302membrane related protein CP5, putative, expressed
LOC_Os04g02920Os.52503.1.S1_at10/114+1147740..1153958Leucine Rich Repeat family protein, expressed
LOC_Os04g02929NANA4+1154055..1154996NA
LOC_Os04g02940NANA4+1160712..1160975hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11963.1.S2_at--950--6291Chr04:1136546..1136570 (25 bp)
GATGAGCTCATCACTGCAGAGGACA
LOC_Os04g02910
Os.11963.1.S2_at--1096--1291Chr04:1136517..1136541 (25 bp)
AGAGGCCAGTTCAACCAACAACGCT
LOC_Os04g02910
Os.11963.1.S2_at--424--2851Chr04:1136452..1136476 (25 bp)
AAGTCATCCTTGTAGGTGGCGCAGT
LOC_Os04g02910
Os.11963.1.S2_at--802--1231Chr04:1136430..1136454 (25 bp)
AGTTGCCCTGGCATGCACGTTTGAC
LOC_Os04g02910
Os.11963.1.S2_at--819--5091Chr04:1136416..1136440 (25 bp)
GCACGTTTGACCATGGACTGTTAAC
LOC_Os04g02910
Os.11963.1.S2_at--534--2931Chr04:1136390..1136414 (25 bp)
AAGGCTCTCATATTTGGTACGGCGA
LOC_Os04g02910
Os.11963.1.S2_at--339--111Chr04:1136317..1136341 (25 bp)
ATTCTTCGCTTATCATTTTTCAACA
LOC_Os04g02910
Os.11963.1.S2_at--159--7831Chr04:1136289..1136313 (25 bp)
GGTACAAAAGGTCGCCCGCAAAGCT
LOC_Os04g02910
Os.11963.1.S2_at--930--4731Chr04:1136267..1136291 (25 bp)
GCTGTCATCGTACCAATAGTCCAAT
LOC_Os04g02910
Os.11963.1.S2_at--800--2652Chr11:6418575..6418663 (25 bp)
AAGCCTTTTTTGCAGTTCAGATAGT
NONE
Os.11963.1.S2_at--26--6511Chr04:1136204..1136228 (25 bp)
GATAGTGCCATTGTTGCATATTCTG
LOC_Os04g02910
Target Sequence 
GATGAGCTCATCACTGCAGAGGACAAGACAGAGGCCAGTTCAACCAACAACGCTGAAGCTGAGAAACCAAAGCACTGGAC
AGGCAATATACCCAAAGTCATCCTTGTAGGTGGCGCAGTTGCCCTGGCATGCACGTTTGACCATGGACTGTTAACAAAGG
CTCTCATATTTGGTACGGCGAGGAGGTTTGCAGGACCAGGAAGGAGATGAAGTTAAGTCCTAATGAACAATTCTTCGCTT
ATCATTTTTCAACAGAAGGTACAAAAGGTCGCCCGCAAAGCTGTCATCGTACCAATAGTCCAATACAGCAGATGATGCAG
ATCAAGCCTTTTTTGCAGTTCAGATAGTGCCATTGTTGCATATTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11963.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis