Browse Element(s) Details


Os.11963.1.S1_at

Description gb:AK063189.1
DB_XREF= gi:32973207
TID=Os.11963.1
CNT=48
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-B08, full insert sequence.
FL= gb:AK061898.1 gb:AK063189.1 gb:AK065035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0291011/11membrane related protein CP5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02870Os.18127.1.A1_at10/114+1107699..1112090Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os04g02880Os.36969.1.S1_at4/114+1113164..1113561expressed protein
LOC_Os04g02890Os.27457.1.S1_at11/114+1115814..1121887expressed protein
LOC_Os04g02890Os.27807.2.S1_a_at11/114+1115814..1121887expressed protein
LOC_Os04g02900Os.15076.1.S1_at11/114+1122969..1126811Pyruvate dehydrogenase E1 component alpha subunit, putative, expressed
LOC_Os04g02910Os.11963.1.S2_at11/114+1135888..1139302membrane related protein CP5, putative, expressed
LOC_Os04g02910Os.11963.1.S1_at11/114+1135888..1139302membrane related protein CP5, putative, expressed
LOC_Os04g02920Os.52503.1.S1_at10/114+1147740..1153958Leucine Rich Repeat family protein, expressed
LOC_Os04g02929NANA4+1154055..1154996NA
LOC_Os04g02940NANA4+1160712..1160975hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11963.1.S1_at--98--4511Chr04:1139160..1139184 (25 bp)
GCCGTTTTGGATTCTTCCCTGATTT
LOC_Os04g02910
Os.11963.1.S1_at--481--531Chr04:1139120..1139144 (25 bp)
ATCGCTTGGTGTTTGTGCTTGTTGT
LOC_Os04g02910
Os.11963.1.S1_at--906--8811Chr04:1139101..1139125 (25 bp)
TGTTGTTGCGTTGCGTTTGCTTATA
LOC_Os04g02910
Os.11963.1.S1_at--1086--4631Chr04:1139089..1139113 (25 bp)
GCGTTTGCTTATAGTGGTCCAGTGA
LOC_Os04g02910
Os.11963.1.S1_at--421--4431Chr04:1139042..1139066 (25 bp)
GCCATGAGCGCCAGAGAGAGATTTT
LOC_Os04g02910
Os.11963.1.S1_at--830--6531Chr04:1138997..1139021 (25 bp)
GATTTCATCATCATCTAGGCCCAAA
LOC_Os04g02910
Os.11963.1.S1_at--639--3151Chr04:1138946..1138970 (25 bp)
AATTCTTCTCAGATTGCATCACCAG
LOC_Os04g02910
Os.11963.1.S1_at--137--6171Chr04:1138918..1138942 (25 bp)
GAGGATTGTCAGATTGCTGCTGCTG
LOC_Os04g02910
Os.11963.1.S1_at--621--4771Chr04:1138897..1138921 (25 bp)
GCTGCTCTTGTACTAGTTGTATTCA
LOC_Os04g02910
Os.11963.1.S1_at--274--6431Chr04:1138833..1138857 (25 bp)
GATCTTTTCTTCCTCCTTGATTAAT
LOC_Os04g02910
Os.11963.1.S1_at--50--3171Chr04:1138811..1138835 (25 bp)
AATTCCTGAGGCGTGTGTGTGATTA
LOC_Os04g02910
Target Sequence 
GCCGTTTTGGATTCTTCCCTGATTTTTTCCCCTCCTCTCGATCGCTTGGTGTTTGTGCTTGTTGTTGCGTTGCGTTTGCT
TATAGTGGTCCAGTGAGCTCCNAGCGAGCAAAAACAGACGCCATGAGCGCCAGAGAGAGATTTTGGTGCCAATAGACACA
CACTGATTTCATCATCATCTAGGCCCAAAAACCTCTACTCTTCCGCGTCTTGGANNNNNNNNNNNNAAATTCTTCTCAGA
TTGCATCACCAGNAGGAGGATTGTCAGATTGCTGCTGCTGCTCTTGTACTAGTTGTATTCAGGATTCAGAATTTGGGCGG
ACGANGANGAGGANNNTAAATCGGATCTTTTCTTCCTCCTTGATTAATTCCTGAGGCGTGTGTGTGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis