Browse Element(s) Details


Os.9810.1.S1_at

Description gb:AU088738
DB_XREF= gi:7378467
DB_XREF=AU088738
CLONE=S5305
TID=Os.9810.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9810 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565075.1 (A.thaliana) putative lipase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g015904/11ab-hydrolase associated lipase region family protein, expressed
LOC_Os03g105701/11meiotic asynaptic mutant 1, putative
LOC_Os09g329301/11meiotic asynaptic mutant 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g01530NANA9+378642..384737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g01540NANA9+385054..388015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g01550NANA9+391702..394663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g01560Os.10703.2.S1_x_at1/119+394980..401077retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g01570Os.46785.2.S1_x_at5/119+401813..405775retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g01580NANA9+407391..407723hypothetical protein
LOC_Os09g01590Os.15296.1.S1_at11/119+409601..418217ab-hydrolase associated lipase region family protein, expressed
LOC_Os09g01590Os.9810.1.S1_at4/119+409601..418217ab-hydrolase associated lipase region family protein, expressed
LOC_Os09g01600Os.25526.1.S1_at11/119+421295..426050expressed protein
LOC_Os09g01600Os.40235.1.S1_at2/119+421295..426050expressed protein
LOC_Os09g01600Os.27457.1.S1_at2/119+421295..426050expressed protein
LOC_Os09g01610Os.51948.1.S1_at11/119+428888..431329expressed protein
LOC_Os09g01620Os.52200.1.S1_at11/119+436172..441919RNA pseudouridylate synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007129biological_processsynapsis
GO:0007130biological_processsynaptonemal complex formation
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0003677molecular_functionDNA binding
GO:0003824molecular_functioncatalytic activity
GO:0016298molecular_functionlipase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9810.1.S1_at--1122--9271NONE
TCCGGCGGACTCTGGGAACAGCTGT
NONE
Os.9810.1.S1_at--896--5711NONE
GACTCTGGGAACAGCTGTCCTGCAC
NONE
Os.9810.1.S1_at--236--8171NONE
GGAACAGCTGTCCTGCACTCGGGTA
NONE
Os.9810.1.S1_at--1029--3831NONE
CTGCACTCGGGTACCCTGGAACGAG
NONE
Os.9810.1.S1_at--528--7691NONE
GGGTACCCTGGAACGAGCACAACGT
NONE
Os.9810.1.S1_at--620--9951NONE
TACCCTGGAACGAGCACAACGTTGA
NONE
Os.9810.1.S1_at--907--5951Chr09:412838..412862 (25 bp)
GAGCAATCACTTGGGTATATCCTTG
LOC_Os09g01590
Os.9810.1.S1_at--708--371Chr09:412843..412867 (25 bp)
ATCACTTGGGTATATCCTTGCTGAT
LOC_Os09g01590
Os.9810.1.S1_at--1001--2591Chr09:412903..412927 (25 bp)
AACGCGTTGGAGTAAAGGTCATTCA
LOC_Os09g01590
Os.9810.1.S1_at--1068--113Chr09:412923..412947 (25 bp)
ATTCAACCTTTTCTGTTCATGATAA
LOC_Os09g01590
Os.9810.1.S1_at--662--3011NONE
AATGCTAGGCTATGTATATATTGCA
NONE
Target Sequence 
TCCGGCGGACTCTGGGAACAGCTGTCCTGCACTCGGGTACCCTGGAACGAGCACAACGTTGAAACAAAAGATGGATTCCT
NTNANCTNTTCAGCATATNCCNNCATGGCNAAAATAAANCAGCAGATAGTNCTGNCCCTCCAGTTTTTCTTCAACATGNT
CTTTTTCAGGGAGGAGACACATGGNTCNTAAACTCTGNTGAGCAATCACTTGGGTATATCCTTGCTGATAACGGTTTTGA
TGTTTGGATTGGGAATGTCCGTGGAACGCGTTGGAGTAAAGGTCATTCAACCTTTTCTGTTCATGATAAGCTTTTCTGGG
ATTGGAGCTGGCAAGAGTTAGCTGAATATGACCTTTTAGCAATGCTAGGCTATGTATATATTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis