Browse Element(s) Details


Os.52200.1.S1_at

Description gb:AK065573.1
DB_XREF= gi:32975591
TID=Os.52200.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013029D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029D18, full insert sequence.
FL= gb:AK065573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0162011/11RNA pseudouridylate synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g01590Os.15296.1.S1_at11/119+409601..418217ab-hydrolase associated lipase region family protein, expressed
LOC_Os09g01590Os.9810.1.S1_at4/119+409601..418217ab-hydrolase associated lipase region family protein, expressed
LOC_Os09g01600Os.25526.1.S1_at11/119+421295..426050expressed protein
LOC_Os09g01600Os.40235.1.S1_at2/119+421295..426050expressed protein
LOC_Os09g01600Os.27457.1.S1_at2/119+421295..426050expressed protein
LOC_Os09g01610Os.51948.1.S1_at11/119+428888..431329expressed protein
LOC_Os09g01620Os.52200.1.S1_at11/119+436172..441919RNA pseudouridylate synthase family protein, expressed
LOC_Os09g01630Os.6813.1.S1_at11/119+443803..450698transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g01640Os.6161.1.S1_at11/119+455264..456840Zinc knuckle family protein, expressed
LOC_Os09g01650NANA9+466011..472046peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004730molecular_functionpseudouridylate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52200.1.S1_at--821--9071Chr09:440123..440147 (25 bp)
TGCTTCTGTTCAGGATGCTTTGACA
LOC_Os09g01620
Os.52200.1.S1_at--24--8311Chr09:441256..441280 (25 bp)
GGCTAGAACTATTTCCTCGTACTGG
LOC_Os09g01620
Os.52200.1.S1_at--579--931Chr09:441533..441557 (25 bp)
AGGAAGCTTCCCTTTGGGCTTGTTG
LOC_Os09g01620
Os.52200.1.S1_at--73--5131Chr09:441610..441634 (25 bp)
GCAAATGGTTCTTCCTGATGTCTCA
LOC_Os09g01620
Os.52200.1.S1_at--965--751Chr09:441627..441651 (25 bp)
ATGTCTCAGTGGCTCTTCATAGGCT
LOC_Os09g01620
Os.52200.1.S1_at--90--9611Chr09:441643..441667 (25 bp)
TCATAGGCTGCAGTCTTCAGACGTT
LOC_Os09g01620
Os.52200.1.S1_at--436--1451Chr09:441690..441714 (25 bp)
AGAAGCTCAACTTTGTTGCTCCACT
LOC_Os09g01620
Os.52200.1.S1_at--698--3331Chr09:441711..441735 (25 bp)
CACTGCCGTTGCATATGCGGTTGAG
LOC_Os09g01620
Os.52200.1.S1_at--587--3571Chr09:441816..441840 (25 bp)
CATATTTACCACAATGTCTGCCTCT
LOC_Os09g01620
Os.52200.1.S1_at--625--3211Chr09:441847..441871 (25 bp)
CAAGGTGGCTTTTTCTTTGTGGTAG
LOC_Os09g01620
Os.52200.1.S1_at--186--6971Chr09:441868..441892 (25 bp)
GTAGCTACTAATACCATTCTCCTAG
LOC_Os09g01620
Target Sequence 
TGCTTCTGTTCAGGATGCTTTGACAGAGTACAGAGTGATTGAATCTTGCCCCCAAGGGTACACTTGGCTAGAACTATTTC
CTCGTACTGGAAGAAAGCATCAGAGGTTCTTGGAACCCCAATTGTTGGGGATTACAAGTATGGACGGCAAGCGCATCAGA
AGTGGATGCCTCTTCCCCTGCCACGGACAATTGATGAGGAACTGCTCAGGAAAAGGAAGCTTCCCTTTGGGCTTGTTGTG
GGTGGCGGAAGCATCGCTGAGGAGCAACCTCAGCTTCATCTACACTGCAAGCAAATGGTTCTTCCTGATGTCTCAGTGGC
TCTTCATAGGCTGCAGTCTTCAGACGTTAATCCTGATTTCTCAGATCTTGAGAAGCTCAACTTTGTTGCTCCACTGCCGT
TGCATATGCGGTTGAGTTGGGAGATTTTGAAGTCTGTGAAGATTTAAGAAATTTTTTTAAAAAAATTCTTGTCTCTCTCT
CTCTCTGTATGTTCTGCATATTTACCACAATGTCTGCCTCTTCTTTTCAAGGTGGCTTTTTCTTTGTGGTAGCTACTAAT
ACCATTCTCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis