Browse Element(s) Details


Os.30324.2.S1_x_at

Description gb:NM_192953.1
DB_XREF= gi:34912989
GEN=P0663E10.8
TID=Os.30324.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30324 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0663E10.8 (P0663E10.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0663E10.8 (P0663E10.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4425011/11YZ1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44200Os.31613.2.S1_at9/111+25663424..25673267hypothetical protein
LOC_Os01g44200Os.31613.2.S1_x_at6/111+25663424..25673267hypothetical protein
LOC_Os01g44200Os.41174.1.S1_at4/111+25663424..25673267hypothetical protein
LOC_Os01g44210Os.11136.1.S1_at11/111+25677526..25678384ribosomal protein L31 containing protein, expressed
LOC_Os01g44220Os.6732.1.S1_a_at11/111+25680653..25688790Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os01g44230Os.2350.1.S1_at10/111+25689947..25694005X1, putative, expressed
LOC_Os01g44240NANA1+25694293..25694748Zinc finger, C3HC4 type family protein
LOC_Os01g44250Os.30324.2.S1_x_at11/111+25695329..25697854YZ1, putative, expressed
LOC_Os01g44260Os.3379.1.S1_at11/111+25709546..25711525Dihydroflavonol-4-reductase, putative, expressed
LOC_Os01g44270NANA1+25712104..25713629hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30324.2.S1_x_at--495--10631Chr01:25697154..25697178 (25 bp)
TTCGCAAATACGACCAAGCCTGTTT
LOC_Os01g44250
Os.30324.2.S1_x_at--98--1691Chr01:25697170..25697194 (25 bp)
AGCCTGTTTCAGTCTACTCGGATCA
LOC_Os01g44250
Os.30324.2.S1_x_at--93--1411Chr01:25697194..25697218 (25 bp)
AGACTCTCGCTGATGCATTGCATAT
LOC_Os01g44250
Os.30324.2.S1_x_at--939--7331Chr01:25697288..25697312 (25 bp)
GTGCAGCGATCTTTATCAGCTTCTG
LOC_Os01g44250
Os.30324.2.S1_x_at--734--10611Chr01:25697308..25697332 (25 bp)
TTCTGGACGATAGCTCCCTATTTAG
LOC_Os01g44250
Os.30324.2.S1_x_at--281--3151Chr01:25697491..25697515 (25 bp)
AATTCATCAGCTTCTGGTGGCCAAA
LOC_Os01g44250
Os.30324.2.S1_x_at--980--2431Chr01:25697513..25697537 (25 bp)
AAAATGTCCTCAGCCTCAGAACAGG
LOC_Os01g44250
Os.30324.2.S1_x_at--172--6171Chr01:25697541..25697565 (25 bp)
GAGGATAACAGCAGGCCTGCCTGTT
LOC_Os01g44250
Os.30324.2.S1_x_at--355--2851Chr01:25697575..25697599 (25 bp)
AAGTCTGACACCCTGAAGCAAGCAA
LOC_Os01g44250
Os.30324.2.S1_x_at--1141--4151Chr01:25697705..25697729 (25 bp)
CGCCATGCATGGACTCGAGGATCGA
LOC_Os01g44250
Os.30324.2.S1_x_at--468--6171Chr01:25697721..25697745 (25 bp)
GAGGATCGACGGAGGCACCTTCTTC
LOC_Os01g44250
Target Sequence 
TTCGCAAATACGACCAAGCCTGTTTCAGTCTACTCGGATCAGACTCTCGCTGATGCATTGCATATTCTTTCAAAGGAGAA
AATAGGAGTTGCAGTTGTTGACAGGAAAACCAGTTGTCTGATTGGATCAATACAGTGCAGCGATCTTTATCAGCTTCTGG
ACGATAGCTCCCTATTTAGGAACAGGAACACAGAAAATTCATCAGCTTCTGGTGGCCAAAATGTCCTCAGCCTCAGAACA
GGGCAGAGGATAACAGCAGGCCTGCCTGTTACCAACCGCAAGTCTGACACCCTGAAGCAAGCAATGGAGAAGCTGACAGC
GTCAAGAAGCAGCTGCAGCTTCATCGTCGACGAGCACGGGCGAGTCGAAGGAGTAGTCACGGCAAGGGACATCATCTCCG
TCTTCTCCCCGCCATGCATGGACTCGAGGATCGACGGAGGCACCTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30324.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis