Browse Element(s) Details


Os.45945.1.S1_at

Description gb:NM_192960.1
DB_XREF= gi:34913003
GEN=P0663E10.16
TID=Os.45945.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45945 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative laccase (P0663E10.16), mRNA.
PROD=putative laccase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4433011/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44310Os.27848.1.S1_at11/111+25744106..25752571expressed protein
LOC_Os01g44320OsAffx.23657.1.S1_at11/111+25754323..25755180hypothetical protein
LOC_Os01g44330Os.45945.1.S1_at11/111+25765930..25767927Multicopper oxidase family protein, expressed
LOC_Os01g44340OsAffx.21322.1.S1_at11/111+25769450..25770894Pectinesterase family protein
LOC_Os01g44350OsAffx.2233.1.S1_x_at11/111+25772094..25772717hypothetical protein
LOC_Os01g44360Os.23714.1.A1_at11/111+25775244..25777490CBS domain containing protein, expressed
LOC_Os01g44370NANA1+25784429..25784710myb family transcription factor, putative
LOC_Os01g44380OsAffx.21320.1.S1_at11/111+25786072..25786392hypothetical protein
LOC_Os01g44390Os.41164.1.S1_at11/111+25788851..25790532myb family transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45945.1.S1_at--157--4231Chr01:25766597..25766621 (25 bp)
CCGTGCGAGACGTGCCTGAACAGGT
LOC_Os01g44330
Os.45945.1.S1_at--957--1391Chr01:25766590..25766614 (25 bp)
AGACGTGCCTGAACAGGTCGCGCCT
LOC_Os01g44330
Os.45945.1.S1_at--833--8971Chr01:25766554..25766578 (25 bp)
TGAACAACATCACCTTCGTGATGCC
LOC_Os01g44330
Os.45945.1.S1_at--521--9051Chr01:25766515..25766539 (25 bp)
TGCAGGCGCACTACTACGGCCAGAA
LOC_Os01g44330
Os.45945.1.S1_at--878--2011Chr01:25766503..25766527 (25 bp)
ACTACGGCCAGAAGGGCGTGTTCGC
LOC_Os01g44330
Os.45945.1.S1_at--347--9451Chr01:25766413..25766437 (25 bp)
TCGGCACGTCGCTCGGCACGAGGCT
LOC_Os01g44330
Os.45945.1.S1_at--493--911Chr01:25766184..25766208 (25 bp)
AGGCTGGACCGCGATCAGGTTCAGA
LOC_Os01g44330
Os.45945.1.S1_at--440--3471Chr01:25766169..25766193 (25 bp)
CAGGTTCAGAGCAGACAACCCAGGT
LOC_Os01g44330
Os.45945.1.S1_at--1076--4171Chr01:25766041..25766062 (22 bp)
CCCAGGTGTTTGGTTCTTGCATTGC
LOC_Os01g44330
Os.45945.1.S1_at--324--10731Chr01:25766025..25766049 (25 bp)
TTGCATTGCCACCTTGAGGTGCACA
LOC_Os01g44330
Os.45945.1.S1_at--1128--4352Chr11:14849115..14849137 (22 bp)
CCACCTTGAGGTGCACACGAGCTGG
NONE
Target Sequence 
CCGTGCGAGACGTGCCTGAACAGGTCGCGCCTCGCGGCGTCGCTGAACAACATCACCTTCGTGATGCCGCGGACGGCGCT
GCTGCAGGCGCACTACTACGGCCAGAAGGGCGTGTTCGCCGCCGACTTCCCGGACCGCCCGCCGGCGCGGTTCAACTACA
CGGGCGTGCCGCTCACCGCCGGCCTCGGCACGTCGCTCGGCACGAGGCTGAGCAAGATCGCGTACAACGCCACCGTGGAG
CTGGTGCTGCAGGACACCAACCTCCTGTCCGTCGAGTCGCACCCGTTCCACCTCCACGGCTACAACTTCTTCGTCGTCGG
GAGAGGCGTCGGCAACTTCGACCCGGCCAAGGACCCCGCCAAGTACAACCTCGTCGACCCGCCGGAGAGGAACACCGTCG
GCGTGCCCGCCGGAGGCTGGACCGCGATCAGGTTCAGAGCAGACAACCCAGGTGTTTGGTTCTTGCATTGCCACCTTGAG
GTGCACACGAGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis