Browse Element(s) Details


Os.41164.1.S1_at

Description gb:AK112054.1
DB_XREF= gi:37988717
TID=Os.41164.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.41164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0663E10.22 (P0663E10.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G06, full insert sequence.
FL= gb:AK112054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4439011/11myb family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44330Os.45945.1.S1_at11/111+25765930..25767927Multicopper oxidase family protein, expressed
LOC_Os01g44340OsAffx.21322.1.S1_at11/111+25769450..25770894Pectinesterase family protein
LOC_Os01g44350OsAffx.2233.1.S1_x_at11/111+25772094..25772717hypothetical protein
LOC_Os01g44360Os.23714.1.A1_at11/111+25775244..25777490CBS domain containing protein, expressed
LOC_Os01g44370NANA1+25784429..25784710myb family transcription factor, putative
LOC_Os01g44380OsAffx.21320.1.S1_at11/111+25786072..25786392hypothetical protein
LOC_Os01g44390Os.41164.1.S1_at11/111+25788851..25790532myb family transcription factor, putative, expressed
LOC_Os01g44394Os.7481.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.56992.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.24693.1.A1_s_at1/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44430NANA1+25803592..25809821ZF-HD protein dimerisation region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41164.1.S1_at--1047--10711Chr01:25788891..25788915 (25 bp)
TTGCTGTGTGAGACTCGATGGCGTC
LOC_Os01g44390
Os.41164.1.S1_at--801--7231Chr01:25789048..25789072 (25 bp)
GTCCGCCGACGAGGTGAAGCTCTAC
LOC_Os01g44390
Os.41164.1.S1_at--185--9711Chr01:25789095..25789119 (25 bp)
TCAAGCGCATCGAGACCGGGAAGGT
LOC_Os01g44390
Os.41164.1.S1_at--833--3531Chr01:25789102..25789126 (25 bp)
CATCGAGACCGGGAAGGTGCCCTTC
LOC_Os01g44390
Os.41164.1.S1_at--333--6591Chr01:25790277..25790298 (22 bp)
GATTGCAGGCTGAAAGCACCTCGAT
LOC_Os01g44390
Os.41164.1.S1_at--110--5251Chr01:25790336..25790360 (25 bp)
GAATAATATCCTAGTCTGCACTCTG
LOC_Os01g44390
Os.41164.1.S1_at--904--10031Chr01:25790347..25790371 (25 bp)
TAGTCTGCACTCTGTACTACGTTGA
LOC_Os01g44390
Os.41164.1.S1_at--500--9031Chr01:25790352..25790376 (25 bp)
TGCACTCTGTACTACGTTGATCAAT
LOC_Os01g44390
Os.41164.1.S1_at--539--6651Chr01:25790367..25790391 (25 bp)
GTTGATCAATCGATCTCCCGCGAGC
LOC_Os01g44390
Os.41164.1.S1_at--414--9311Chr01:25790382..25790406 (25 bp)
TCCCGCGAGCGTGCTTATTTGTAAA
LOC_Os01g44390
Os.41164.1.S1_at--452--211Chr01:25790398..25790422 (25 bp)
ATTTGTAAATTTATGCACGCGTGCA
LOC_Os01g44390
Target Sequence 
TTGCTGTGTGAGACTCGATGGCGTCGATGTCGGTGAGCTCGTCGAGGGCGCCGCAGTGGACGGCGAGGCAGAACGAGCAG
TTCGAGCGGGCGCTGGCGGTGTACGACAGGGACACGCCGGAGCGGTGGCACAACATCGCGCGCGCCGTTGCGGGGAAGTC
CGCCGACGAGGTGAAGCTCTACTACGACCTGCTCGTGGAGGACGTCAAGCGCATCGAGACCGGGAAGGTGCCCTTCCCCG
CGTACAGGTGCCCCCNGCCCGCGATTGCAGGCTGAAAGCACCTCGATNTGAACGACTGCACCTGNAGATCTAGCTNTGCG
GCATGAATAATATCCTAGTCTGCACTCTGTACTACGTTGATCAATCGATCTCCCGCGAGCGTGCTTATTTGTAAATTTAT
GCACGCGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis