Browse Element(s) Details


Os.38062.1.S1_at

Description gb:AK120378.1
DB_XREF= gi:37990001
TID=Os.38062.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.38062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072A10, full insert sequence.
FL= gb:AK120378.1 gb:AK062221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2009011/11non-repetitive/WGA-negative nucleoporin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20040Os.50300.1.S1_at11/116+11485981..11493270Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20040Os.50300.1.S1_s_at11/116+11485981..11493270Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20040Os.17403.1.S1_a_at1/116+11485981..11493270Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20050NANA6+11497993..11502824NB-ARC domain containing protein
LOC_Os06g20060OsAffx.15510.1.S1_at11/116+11503386..11506370expressed protein
LOC_Os06g20070OsAffx.4878.1.S1_at11/116+11508924..11509777hypothetical protein
LOC_Os06g20080OsAffx.4153.1.S1_s_at3/116+11511038..11511710hypothetical protein
LOC_Os06g20080Os.12293.1.S1_a_at1/116+11511038..11511710hypothetical protein
LOC_Os06g20090Os.38062.1.S1_at11/116+11514409..11524786non-repetitive/WGA-negative nucleoporin family protein, putative, expressed
LOC_Os06g20090OsAffx.20517.1.S1_at2/116+11514409..11524786non-repetitive/WGA-negative nucleoporin family protein, putative, expressed
LOC_Os06g20100OsAffx.27724.1.S1_at11/116+11527811..11528314hypothetical protein
LOC_Os06g20110OsAffx.27725.1.S1_at11/116+11531552..11532859Eukaryotic aspartyl protease family protein
LOC_Os06g20120OsAffx.15511.1.S1_at11/116+11534324..11536445hypothetical protein
LOC_Os06g20130OsAffx.12985.2.S1_x_at11/116+11544630..11548161hypothetical protein
LOC_Os06g20130OsAffx.12985.2.S1_at11/116+11544630..11548161hypothetical protein
LOC_Os06g20130OsAffx.2233.1.S1_x_at1/116+11544630..11548161hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006913biological_processnucleocytoplasmic transport
GO:0005643cellular_componentnuclear pore
GO:0005487molecular_functionnucleocytoplasmic transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38062.1.S1_at--12--6171Chr06:11523820..11523844 (25 bp)
GAGGATGTTGCAAGAGCCCTTCTCG
LOC_Os06g20090
Os.38062.1.S1_at--544--9491Chr06:11523840..11523864 (25 bp)
TCTCGGAGCCTGTAAAGGTCTACCT
LOC_Os06g20090
Os.38062.1.S1_at--841--5432Chr06:11523865..11523889 (25 bp)
GAACCTGTGCTTGCCGTGTATGATC
LOC_Os06g20090
Os.38062.1.S1_at--691--10151Chr06:11523896..11523920 (25 bp)
TATCAAATGGCGCTATTGTTCCCTC
LOC_Os06g20090
Os.38062.1.S1_at--144--5411Chr06:11523930..11523954 (25 bp)
GAAGCTGCGGCTTCTGAGATCAGTT
LOC_Os06g20090
Os.38062.1.S1_at--579--9832Chr06:11523996..11524020 (25 bp)
TAAACTAGGCACCACAACTGCTGGG
LOC_Os06g20090
Os.38062.1.S1_at--39--6151Chr06:11524595..11524619 (25 bp)
GAGGTGAGGCGGTTAAGCCTTCCAA
LOC_Os06g20090
Os.38062.1.S1_at--849--7151Chr06:11524637..11524661 (25 bp)
GTCTATCGAGGTTTCCAAGAGCTAG
LOC_Os06g20090
Os.38062.1.S1_at--458--10512Chr06:11524689..11524713 (25 bp)
TTCAATTTGTATTCTCGGCACTGTA
LOC_Os06g20090
Os.38062.1.S1_at--780--6711Chr06:11524722..11524746 (25 bp)
GTTCGTGCATTTGTTGTACCCAAGT
LOC_Os06g20090
Os.38062.1.S1_at--221--1572Chr06:11524757..11524781 (25 bp)
AGCTAAGCCATCCTGGTTCAATTGG
LOC_Os06g20090
Target Sequence 
GAGGATGTTGCAAGAGCCCTTCTCGGAGCCTGTAAAGGTCTACCTGAACCTGTGCTTGCCGTGTATGATCAACTGTTATC
AAATGGCGCTATTGTTCCCTCCCTAAACCTGAAGCTGCGGCTTCTGAGATCAGTTCTTGCAATCCTTCGTGAATGGGGCA
TGACTGTCATTGCACATAAACTAGGCACCACAACTGCTGGGGCTTCATTCTTTCTTGATGGAACATTTTCGCTGAATCAA
ACATGGTCTTTAAATCAAGGCGTTCGAGATAAAATAAGTAGTTTGGCAAACCGGTATATGGCTGAGGTGAGGCGGTTAAG
CCTTCCAAAGAACCAAACAGAGAATGTCTATCGAGGTTTCCAAGAGCTAGAGGAGAAATTATTAACTAATTAGACATTTC
AATTTGTATTCTCGGCACTGTAAAACATGGGTTCGTGCATTTGTTGTACCCAAGTAGAGAGATAAAGCTAAGCCATCCTG
GTTCAATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis