Browse Element(s) Details


Os.50300.1.S1_s_at

Description gb:AK120604.1
DB_XREF= gi:37990227
TID=Os.50300.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013150B18, full insert sequence.
FL= gb:AK120604.1 gb:AK102614.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2004011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19990Os.12376.1.S1_at11/116+11460524..11463788expressed protein
LOC_Os06g19990Os.3053.1.A1_at1/116+11460524..11463788expressed protein
LOC_Os06g20000OsAffx.15509.1.S1_at11/116+11468461..11468730hypothetical protein
LOC_Os06g20010OsAffx.4877.1.S1_at11/116+11473474..11473743RNA recognition motif, putative
LOC_Os06g20010OsAffx.4877.1.S1_x_at11/116+11473474..11473743RNA recognition motif, putative
LOC_Os06g20020NANA6+11475505..11476803Zinc finger, C2H2 type family protein, expressed
LOC_Os06g20030Os.49962.1.S1_at11/116+11482109..11485822group II intron splicing factor CRS1, putative, expressed
LOC_Os06g20030Os.39087.1.S1_at1/116+11482109..11485822group II intron splicing factor CRS1, putative, expressed
LOC_Os06g20040Os.50300.1.S1_at11/116+11485981..11493270Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20040Os.50300.1.S1_s_at11/116+11485981..11493270Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20040Os.17403.1.S1_a_at1/116+11485981..11493270Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20050NANA6+11497993..11502824NB-ARC domain containing protein
LOC_Os06g20060OsAffx.15510.1.S1_at11/116+11503386..11506370expressed protein
LOC_Os06g20070OsAffx.4878.1.S1_at11/116+11508924..11509777hypothetical protein
LOC_Os06g20080OsAffx.4153.1.S1_s_at3/116+11511038..11511710hypothetical protein
LOC_Os06g20080Os.12293.1.S1_a_at1/116+11511038..11511710hypothetical protein
LOC_Os06g20090Os.38062.1.S1_at11/116+11514409..11524786non-repetitive/WGA-negative nucleoporin family protein, putative, expressed
LOC_Os06g20090OsAffx.20517.1.S1_at2/116+11514409..11524786non-repetitive/WGA-negative nucleoporin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.50300.1.S1_s_at--377--8891Chr06:11486388..11486412 (25 bp)
TGAGGACCCAAACTGCAGCTGGCCG
LOC_Os06g20040
Os.50300.1.S1_s_at--663--3391Chr06:11486373..11486397 (25 bp)
CAGCTGGCCGACTCAAGCTAGGTAA
LOC_Os06g20040
Os.50300.1.S1_s_at--396--7051Chr06:11486352..11486376 (25 bp)
GTAAAAGAGCAATGCTGCTTCTTCT
LOC_Os06g20040
Os.50300.1.S1_s_at--623--9251Chr06:11486312..11486336 (25 bp)
TCCTATCTCTGCTCAGGCACAGAAG
LOC_Os06g20040
Os.50300.1.S1_s_at--490--7351Chr06:11486288..11486312 (25 bp)
GTGACAACTTCTTAACTGCAAATTC
LOC_Os06g20040
Os.50300.1.S1_s_at--659--9911Chr06:11486224..11486248 (25 bp)
TACGAGTGTGGCTCTAGGACCTAGT
LOC_Os06g20040
Os.50300.1.S1_s_at--1010--951Chr06:11486209..11486233 (25 bp)
AGGACCTAGTTTTACATGTCATAAA
LOC_Os06g20040
Os.50300.1.S1_s_at--285--9851Chr06:11486162..11486186 (25 bp)
TACAGGGTAACTACTTTAGGTGAAG
LOC_Os06g20040
Os.50300.1.S1_s_at--30--871Chr06:11486102..11486126 (25 bp)
ATGGCTGCTTGTTAGCAATCAAGCC
LOC_Os06g20040
Os.50300.1.S1_s_at--679--5191Chr06:11486088..11486112 (25 bp)
GCAATCAAGCCAAAATGTTCATCAT
LOC_Os06g20040
Os.50300.1.S1_s_at--810--3691Chr06:11486052..11486076 (25 bp)
CTATGGGTGTGTTTGGGTTCTAAAT
LOC_Os06g20040
Target Sequence
TGAGGACCCAAACTGCAGCTGGCCGACTCAAGCTAGGTAAAAGAGCAATGCTGCTTCTTCTGCTGCTGCNGCCGCCTCCT
ATCTCTGCTCAGGCACAGAAGTGACAACTTCTTAACTGCAAATTCATTCATCACATGTAAATGCATATANATGTGCCAGG
AAGTTACGAGTGTGGCTCTAGGACCTAGTTTTACATGTCATAAACAAATATAGATGTACAAATAAATACAGGGTAACTAC
TTTAGGTGAAGATAATACTTATCAATGTGAAAGATTATTATGTTATATGGCTGCTTGTTAGCAATCAAGCCAAAATGTTC
ATCATGTACATGTAAACTATGGGTGTGTTTGGGTTCTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50300.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis