Browse Element(s) Details


Os.12293.1.S1_a_at

Description gb:AK063022.1
DB_XREF= gi:32973040
TID=Os.12293.1
CNT=45
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative alpha-amylase (P0025H06.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-B06, full insert sequence.
FL= gb:AK062605.1 gb:AK104924.1 gb:AK063022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5218011/11expressed protein
LOC_Os06g200801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52140Os.14963.1.S1_at11/114+30755091..30760771Protein kinase domain containing protein, expressed
LOC_Os04g52152NANA4+30763430..30764984NA
LOC_Os04g52164Os.22810.1.S1_at11/114+30776280..30780523ZMGLOSSY, putative, expressed
LOC_Os04g52180Os.12293.1.S1_a_at11/114+30781064..30782827expressed protein
LOC_Os04g52180OsAffx.4153.1.S1_s_at11/114+30781064..30782827expressed protein
LOC_Os04g52190Os.27799.1.S1_at11/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52190OsAffx.24964.2.S1_s_at2/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52200OsAffx.14374.1.S1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200OsAffx.14374.1.S1_x_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200Os.36109.1.A1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52210OsAffx.14375.1.S1_at11/114+30800291..30805182Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g52220OsAffx.26570.1.S1_at11/114+30805568..30805981hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12293.1.S1_a_at--695--2451Chr04:30782401..30782425 (25 bp)
AACAAGTCCAAGTCCTTCTTGAAGC
LOC_Os04g52180
Os.12293.1.S1_a_at--255--7271Chr04:30782406..30782430 (25 bp)
GTCCAAGTCCTTCTTGAAGCCAATT
LOC_Os04g52180
Os.12293.1.S1_a_at--861--7251Chr04:30782412..30782436 (25 bp)
GTCCTTCTTGAAGCCAATTGGTAGC
LOC_Os04g52180
Os.12293.1.S1_a_at--314--1472Chr06:11511625..11511649 (25 bp)
AGAAGGTACAACTTCACTTGAAGAT
LOC_Os06g20080
Os.12293.1.S1_a_at--690--6911Chr04:30782520..30782544 (25 bp)
GTAGGTGTCAAAGCTTACTCTGTTA
LOC_Os04g52180
Os.12293.1.S1_a_at--947--4891Chr04:30782532..30782556 (25 bp)
GCTTACTCTGTTATGAGAACCATCA
LOC_Os04g52180
Os.12293.1.S1_a_at--231--653Chr06:11512763..11512787 (25 bp)
ATGCATGTAATGGTAATCTCTTGTG
NONE
Os.12293.1.S1_a_at--1126--3753Chr06:11512780..11512801 (22 bp)
CTCTTGTGTTGTTGTGCACCTAAGT
NONE
Os.12293.1.S1_a_at--708--1733Chr06:11512808..11512829 (22 bp)
ACCATCCATTCTGGGTGGATACCGT
NONE
Os.12293.1.S1_a_at--991--4311Chr04:30782627..30782651 (25 bp)
CCATTCTGGGTGGATACCGTATTGA
LOC_Os04g52180
Os.12293.1.S1_a_at--206--7731Chr04:30782635..30782659 (25 bp)
GGTGGATACCGTATTGAAATCAGCG
LOC_Os04g52180
Target Sequence 
AACAAGTCCAAGTCCTTCTTGAAGCCAATTGGTAGCATTAGCAAGAAGAAGGTACAACTTCACTTGAAGATCAAGAAAGA
TAAAAGAAAAGCTAGGAAGAAGGGGAGGTTTAGTAAAAAGTAGGTGTCAAAGCTTACTCTGTTATGAGAACCATCAATTT
TGGTTAGTTTGAACAATGCATGTAATGGTAATCTCTTGTGTTGTTGTGCACCTAAGTGTTAACCATCCATTCTGGGTGGA
TACCGTATTGAAATCAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12293.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis