Browse Element(s) Details


OsAffx.14375.1.S1_at

Description tigr:9632.m05055
TID=OsAffx.14375.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase family, metal binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5221011/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52164Os.22810.1.S1_at11/114+30776280..30780523ZMGLOSSY, putative, expressed
LOC_Os04g52180Os.12293.1.S1_a_at11/114+30781064..30782827expressed protein
LOC_Os04g52180OsAffx.4153.1.S1_s_at11/114+30781064..30782827expressed protein
LOC_Os04g52190Os.27799.1.S1_at11/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52190OsAffx.24964.2.S1_s_at2/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52200OsAffx.14374.1.S1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200OsAffx.14374.1.S1_x_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200Os.36109.1.A1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52210OsAffx.14375.1.S1_at11/114+30800291..30805182Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g52220OsAffx.26570.1.S1_at11/114+30805568..30805981hypothetical protein
LOC_Os04g52230OsAffx.27508.22.S1_s_at11/114+30808288..30812175Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g52240OsAffx.14376.1.S1_at11/114+30815974..30824354Terpene synthase family, metal binding domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14375.1.S1_at--384--8311Chr04:30803838..30803862 (25 bp)
GGCTAGATTTGCTTAGGTCCATGAT
LOC_Os04g52210
OsAffx.14375.1.S1_at--774--8011Chr04:30803877..30803901 (25 bp)
GGAGGATCAGCAACTACGTGCCTAC
LOC_Os04g52210
OsAffx.14375.1.S1_at--724--2531Chr04:30803888..30803912 (25 bp)
AACTACGTGCCTACACCAGAGGAGT
LOC_Os04g52210
OsAffx.14375.1.S1_at--447--4431Chr04:30803927..30803951 (25 bp)
GCCATGACATTTGCATTGGGCCCAA
LOC_Os04g52210
OsAffx.14375.1.S1_at--310--3171Chr04:30803950..30803974 (25 bp)
AATTGTGCTCCCAGCTTTGTATCTT
LOC_Os04g52210
OsAffx.14375.1.S1_at--160--4351Chr04:30803960..30803984 (25 bp)
CCAGCTTTGTATCTTGTCGGACCAA
LOC_Os04g52210
OsAffx.14375.1.S1_at--206--2811Chr04:30803984..30804008 (25 bp)
AAGATCCCTGAATCTGTCGTCAGAG
LOC_Os04g52210
OsAffx.14375.1.S1_at--861--2491Chr04:30804698..30804722 (25 bp)
AACAGTGTGTCGCTGCTTGTCATTC
LOC_Os04g52210
OsAffx.14375.1.S1_at--59--10811Chr04:30804714..30804738 (25 bp)
TTGTCATTCAGAGCGGCGGTTCAGT
LOC_Os04g52210
OsAffx.14375.1.S1_at--830--7891Chr04:30804731..30804755 (25 bp)
GGTTCAGTGTCCATCGAAGAGGCTA
LOC_Os04g52210
OsAffx.14375.1.S1_at--778--5171Chr04:30804867..30804891 (25 bp)
GCAAGGTCTGCTATTTCTTCTACGC
LOC_Os04g52210
Target Sequence 
GGCTAGATTTGCTTAGGTCCATGATGACCGAGGTAGAATGGAGGATCAGCAACTACGTGCCTACACCAGAGGAGTACATG
GAAAATGCGGCCATGACATTTGCATTGGGCCCAATTGTGCTCCCAGCTTTGTATCTTGTCGGACCAAAGATCCCTGAATC
TGTCGTCAGAGATTCAGAGTACAACGAGTTGTTCAGACTGATGAGCACATGTGGTCGTCTCCTGAATGATGTTCAGACAT
ACGAGAGGGAGGATGGCGAGGGCAAGGTGAACAGTGTGTCGCTGCTTGTCATTCAGAGCGGCGGTTCAGTGTCCATCGAA
GAGGCTAGAAGAGAGATCATGAAGCCGATCGAGAGATGCAGGAGAGAGCTGCTGGGGCTGGTGCTCAGGAGAGGCAGCGC
CGTCCCCGGGCCGTGCAAGGAGCTGTTCTGGAAGATGTGCAAGGTCTGCTATTTCTTCTACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis