Browse Element(s) Details


OsAffx.14376.1.S1_at

Description tigr:9632.m05059
TID=OsAffx.14376.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase family, metal binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5224011/11Terpene synthase family, metal binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52200OsAffx.14374.1.S1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200OsAffx.14374.1.S1_x_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200Os.36109.1.A1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52210OsAffx.14375.1.S1_at11/114+30800291..30805182Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g52220OsAffx.26570.1.S1_at11/114+30805568..30805981hypothetical protein
LOC_Os04g52230OsAffx.27508.22.S1_s_at11/114+30808288..30812175Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g52240OsAffx.14376.1.S1_at11/114+30815974..30824354Terpene synthase family, metal binding domain containing protein
LOC_Os04g52250Os.38235.1.S1_x_at1/114+30832100..30832969transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g52250Os.38235.2.S1_x_at1/114+30832100..30832969transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g52260Os.38235.1.S1_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.2.S1_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.1.S1_x_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.2.S1_x_at10/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52270Os.3437.1.S1_at11/114+30844804..30849804coatomer epsilon subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14376.1.S1_at--911--10191Chr04:30823330..30823354 (25 bp)
TATTTACTTGGGTCACGGGTGACGA
LOC_Os04g52240
OsAffx.14376.1.S1_at--598--3931Chr04:30823388..30823412 (25 bp)
CGGCGGCCTTGGTCATCTGCCAGTA
LOC_Os04g52240
OsAffx.14376.1.S1_at--778--10851Chr04:30823396..30823420 (25 bp)
TTGGTCATCTGCCAGTAGCTGTTGA
LOC_Os04g52240
OsAffx.14376.1.S1_at--434--9493Chr09:22284231..22284254 (24 bp)
TCTGCCAGTAGCTGTTGAAGGCGTA
NONE
OsAffx.14376.1.S1_at--754--7911Chr04:30824104..30824128 (25 bp)
GGTTGACGCAGTACGGCGAGCTCGA
LOC_Os04g52240
OsAffx.14376.1.S1_at--1115--5291Chr04:30824196..30824220 (25 bp)
GAAGGCAGCTGCATCGGCTCCACCG
LOC_Os04g52240
OsAffx.14376.1.S1_at--497--8331Chr04:30824211..30824235 (25 bp)
GGCTCCACCGTCCTGATGAAGTTGA
LOC_Os04g52240
OsAffx.14376.1.S1_at--1097--4351Chr04:30824215..30824239 (25 bp)
CCACCGTCCTGATGAAGTTGAGCTT
LOC_Os04g52240
OsAffx.14376.1.S1_at--21--2831Chr04:30824229..30824253 (25 bp)
AAGTTGAGCTTGTACAGCGCGTTCA
LOC_Os04g52240
OsAffx.14376.1.S1_at--66--7031Chr04:30824240..30824264 (25 bp)
GTACAGCGCGTTCAGCAGCGTGTTC
LOC_Os04g52240
OsAffx.14376.1.S1_at--604--6751Chr04:30824249..30824273 (25 bp)
GTTCAGCAGCGTGTTCCTCCTGCTT
LOC_Os04g52240
Target Sequence 
TATTTACTTGGGTCACGGGTGACGATGGTGGCGGTGCCGCCGAAGTCGCAGGTGCCACCGGCGGCCTTGGTCATCTGCCA
GTAGCTGTTGAAGGCGTAGGAGGCGTGGGCGAGCACGACCCAGGCGTGCTCGGGGTGAAGCCAGGCGTGGACGACGCAGG
CGGGCTCGGCTCGAACGACGGTGGCGTGAAGCCGCCGATGGGGGGCAGCGGCGGGGGCTGGTCGTCCGGGGCGAACGGCG
TCGAGGCGAAGGGAGGTGTCGGCGTCGGTGTCGTTGTCGGGGTGGAGGACGACGGGGGCGCGTTCGGAGGGTTGACGCAG
TACGGCGAGCTCGAGCCGTCGCCGGTGGCGTCGGCGAGGCTCGCCGCGTCGCCGTCCGGCTTCGCCGGAGAAGGAGACGA
AGAAGGCAGCTGCATCGGCTCCACCGTCCTGATGAAGTTGAGCTTGTACAGCGCGTTCAGCAGCGTGTTCCTCCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis