Browse Element(s) Details


Os.3437.1.S1_at

Description gb:AB042115.1
DB_XREF= gi:7670065
GEN=cope1
TID=Os.3437.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.3437 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) cope1 mRNA for epsilon1-COP, complete cds.
PROD=epsilon1-COP
FL= gb:AK104427.1 gb:AK099008.1 gb:AK060707.1 gb:AB042115.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5227011/11coatomer epsilon subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52240OsAffx.14376.1.S1_at11/114+30815974..30824354Terpene synthase family, metal binding domain containing protein
LOC_Os04g52250Os.38235.1.S1_x_at1/114+30832100..30832969transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g52250Os.38235.2.S1_x_at1/114+30832100..30832969transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g52260Os.38235.1.S1_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.2.S1_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.1.S1_x_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.2.S1_x_at10/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52270Os.3437.1.S1_at11/114+30844804..30849804coatomer epsilon subunit, putative, expressed
LOC_Os04g52280Os.32904.1.S1_at11/114+30850553..30854787mannitol dehydrogenase, putative, expressed
LOC_Os04g52290Os.4898.1.S1_at11/114+30854574..30857262pentatricopeptide, putative, expressed
LOC_Os04g52300Os.9807.1.S1_at11/114+30857445..30858798expressed protein
LOC_Os04g52310Os.18572.1.S1_at11/114+30859134..30861473ZIP zinc/iron transport family protein, expressed
LOC_Os04g52320Os.47317.1.S1_at11/114+30870200..30873541expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006890biological_processretrograde vesicle-mediated transport, Golgi to ER
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3437.1.S1_at--51--971Chr04:30847522..30847546 (25 bp)
AGGACCATACACTGACACAACTTGC
LOC_Os04g52270
Os.3437.1.S1_at--390--3631Chr04:30847502..30847526 (25 bp)
CTTGCAAACGCATGGCTGGACATTG
LOC_Os04g52270
Os.3437.1.S1_at--1083--9091Chr04:30847352..30847503 (25 bp)
TGCTGTTGGTGGCTCTAAGATCCGT
LOC_Os04g52270
Os.3437.1.S1_at--864--6371Chr04:30847334..30847358 (25 bp)
GATCCGTGAAGCTTACCTCATATTC
LOC_Os04g52270
Os.3437.1.S1_at--343--6211Chr04:30847225..30847249 (25 bp)
GAGGCTGAGACTCTTTTACTCGAAG
LOC_Os04g52270
Os.3437.1.S1_at--904--8731Chr04:30847000..30847024 (25 bp)
TGTAATCTCCACCTTGGCAAACCGT
LOC_Os04g52270
Os.3437.1.S1_at--80--7051Chr04:30845284..30845308 (25 bp)
GTAAAGCGTGCCGTATCAGCAGAAG
LOC_Os04g52270
Os.3437.1.S1_at--455--7251Chr04:30845220..30845244 (25 bp)
GTCCGCGGAAAACGCTTGCCAGATT
LOC_Os04g52270
Os.3437.1.S1_at--787--4951Chr04:30845131..30845155 (25 bp)
GCATTTGCTCAGTCTGTTTTGCTCA
LOC_Os04g52270
Os.3437.1.S1_at--196--811Chr04:30845105..30845129 (25 bp)
ATGGTGATATACTACCCGGCCAATC
LOC_Os04g52270
Os.3437.1.S1_at--676--3771Chr04:30845075..30845099 (25 bp)
CTCTGAACCCCTGCTGTATAAACAA
LOC_Os04g52270
Target Sequence 
AGGACCATACACTGACACAACTTGCAAACGCATGGCTGGACATTGCTGTTGGTGGCTCTAAGATCCGTGAAGCTTACCTC
ATATTCCAAGACTTTGCTGAAAAATACCCGATGACAGGAATGGTTCTAAATGGCAAGGCAGTTTGCTGTATGCACATGGG
GAGCTTTGATGAGGCTGAGACTCTTTTACTCGAAGCATTGAACAAGGATGCAAAAGATCCTGAAACTCTTGCTAATCTTA
TTGTGTGTAATCTCCACCTTGGCAAACCGTCATCAAGATACCTCAGCCAGCTGAAACTATCACACCCCGATCATGTGCTA
GTAAAGCGTGCCGTATCAGCAGAAGATAACTTCGAGAGAGCTCTCCAAGCCGTCGCTTGAACACGTCCGCGGAAAACGCT
TGCCAGATTGCAGATAACACAATTGATCCCCCATGTTCCATTTTGAGTGCCTTAACACAGCGAAAATTATGTTGCATTTG
CTCAGTCTGTTTTGCTCAAATGGTGATATACTACCCGGCCAATCTTGTACTCTGAACCCCTGCTGTATAAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis