Browse Element(s) Details


Os.18572.1.S1_at

Description gb:AY323915.1
DB_XREF= gi:32492893
TID=Os.18572.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18572 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) zinc transporter ZIP3 mRNA, complete cds.
PROD=zinc transporter ZIP3
FL= gb:AY323915.1 gb:AK069804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5231011/11ZIP zinc/iron transport family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52260Os.38235.1.S1_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.2.S1_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.1.S1_x_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.2.S1_x_at10/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52270Os.3437.1.S1_at11/114+30844804..30849804coatomer epsilon subunit, putative, expressed
LOC_Os04g52280Os.32904.1.S1_at11/114+30850553..30854787mannitol dehydrogenase, putative, expressed
LOC_Os04g52290Os.4898.1.S1_at11/114+30854574..30857262pentatricopeptide, putative, expressed
LOC_Os04g52300Os.9807.1.S1_at11/114+30857445..30858798expressed protein
LOC_Os04g52310Os.18572.1.S1_at11/114+30859134..30861473ZIP zinc/iron transport family protein, expressed
LOC_Os04g52320Os.47317.1.S1_at11/114+30870200..30873541expressed protein
LOC_Os04g52330Os.17679.1.S1_at11/114+30876737..30878634expressed protein
LOC_Os04g52340Os.31773.2.S1_x_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed
LOC_Os04g52340Os.31773.2.S1_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed
LOC_Os04g52354Os.12042.1.S1_at11/114+30884213..3088884240S ribosomal protein S11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0006829biological_processzinc ion transport
GO:0010043biological_processresponse to zinc ion
GO:0005385molecular_functionzinc ion transporter activity
GO:0008324molecular_functioncation transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18572.1.S1_at--204--9891Chr04:30860201..30860225 (25 bp)
TACTATCAGGCCACTAGTTGGTGCC
LOC_Os04g52310
Os.18572.1.S1_at--46--7731Chr04:30859667..30860165 (25 bp)
GGGTGGTTGCATTGTTCAGGCTAAT
LOC_Os04g52310
Os.18572.1.S1_at--489--9771Chr04:30859602..30859626 (25 bp)
TAAGGGCAACCGTCATTATGGCAAT
LOC_Os04g52310
Os.18572.1.S1_at--1072--831Chr04:30859585..30859609 (25 bp)
ATGGCAATATTTTTCTCCCTGACTG
LOC_Os04g52310
Os.18572.1.S1_at--152--2991Chr04:30859516..30859540 (25 bp)
AATGTGCATAGCTCAACTGCCTTCG
LOC_Os04g52310
Os.18572.1.S1_at--518--5311Chr04:30859486..30859510 (25 bp)
GAAGGAGTCTTCAACTCAGCCTCAG
LOC_Os04g52310
Os.18572.1.S1_at--914--751Chr04:30859444..30859468 (25 bp)
ATGTCCCTAGTTGACCTTCTAGCAA
LOC_Os04g52310
Os.18572.1.S1_at--644--2351Chr04:30859385..30859409 (25 bp)
AAAGCTTCAGCTCATGGCATACCTT
LOC_Os04g52310
Os.18572.1.S1_at--134--3331Chr04:30859359..30859383 (25 bp)
CACTTTTCCTAGGTGCTGGACTGAT
LOC_Os04g52310
Os.18572.1.S1_at--1108--8111Chr04:30859342..30859366 (25 bp)
GGACTGATGTCAATGCTTGCCATAT
LOC_Os04g52310
Os.18572.1.S1_at--864--451Chr04:30859170..30859194 (25 bp)
ATCTCAGGTGATCTCTTTGTACTTT
LOC_Os04g52310
Target Sequence 
TACTATCAGGCCACTAGTTGGTGCCCTCAGCTTCCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGG
CTAATTTTAAGGTAAGGGCAACCGTCATTATGGCAATATTTTTCTCCCTGACTGCACCTGTGGGCATCGTGCTAGGAATT
GCAATTTCATCGAGCTACAATGTGCATAGCTCAACTGCCTTCGTCGTTGAAGGAGTCTTCAACTCAGCCTCAGCAGGAAT
TTTGATCTACATGTCCCTAGTTGACCTTCTAGCAACAGATTTCAATAACCCGAAGCTACAGATTAATACAAAGCTTCAGC
TCATGGCATACCTTGCACTTTTCCTAGGTGCTGGACTGATGTCAATGCTTGCCATATGGGCATAGATCTTCAGAATAACA
GAGGATCTTATTTCCCAGATAGGCTTGATTTGTATTAATCTATGAGTTTTCTATCTTCGCAAAATAACATACTCTTGGTG
GAGTATTTATTGTATCCATCCTAGATTTTCTAAAACCAAAGCTTATCTCAGGTGATCTCTTTGTACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis