Browse Element(s) Details


Os.4898.1.S1_at

Description gb:AK071230.1
DB_XREF= gi:32981253
TID=Os.4898.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087G21, full insert sequence.
FL= gb:AK071230.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5229011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52250Os.38235.1.S1_x_at1/114+30832100..30832969transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g52250Os.38235.2.S1_x_at1/114+30832100..30832969transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g52260Os.38235.1.S1_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.2.S1_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.1.S1_x_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.2.S1_x_at10/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52270Os.3437.1.S1_at11/114+30844804..30849804coatomer epsilon subunit, putative, expressed
LOC_Os04g52280Os.32904.1.S1_at11/114+30850553..30854787mannitol dehydrogenase, putative, expressed
LOC_Os04g52290Os.4898.1.S1_at11/114+30854574..30857262pentatricopeptide, putative, expressed
LOC_Os04g52300Os.9807.1.S1_at11/114+30857445..30858798expressed protein
LOC_Os04g52310Os.18572.1.S1_at11/114+30859134..30861473ZIP zinc/iron transport family protein, expressed
LOC_Os04g52320Os.47317.1.S1_at11/114+30870200..30873541expressed protein
LOC_Os04g52330Os.17679.1.S1_at11/114+30876737..30878634expressed protein
LOC_Os04g52340Os.31773.2.S1_x_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed
LOC_Os04g52340Os.31773.2.S1_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4898.1.S1_at--58--3371Chr04:30855204..30855228 (25 bp)
CACCGGTTCAGGAAGCGTATGCTCT
LOC_Os04g52290
Os.4898.1.S1_at--148--4571Chr04:30855163..30855187 (25 bp)
GCGCCGCATCAAGCTAGTGACTGGA
LOC_Os04g52290
Os.4898.1.S1_at--139--2751Chr04:30855030..30855054 (25 bp)
AAGAAGCCGATCGTGCAGCAGTTCC
LOC_Os04g52290
Os.4898.1.S1_at--918--6031Chr04:30854997..30855021 (25 bp)
GAGATACCATCCAAGGCTGACGTCC
LOC_Os04g52290
Os.4898.1.S1_at--823--8851Chr04:30854972..30854996 (25 bp)
TGATGCACAGGCTCAACGTGATGTT
LOC_Os04g52290
Os.4898.1.S1_at--378--6271Chr04:30854882..30854906 (25 bp)
GATGTCTATCTCTGTAGTACGTCGT
LOC_Os04g52290
Os.4898.1.S1_at--556--10031Chr04:30854868..30854892 (25 bp)
TAGTACGTCGTTTTAGCTTCATTCA
LOC_Os04g52290
Os.4898.1.S1_at--792--10371Chr04:30854805..30854829 (25 bp)
TTTTTTGTCCAACCATCAGAGTGAG
LOC_Os04g52290
Os.4898.1.S1_at--911--6111Chr04:30854787..30854811 (25 bp)
GAGTGAGAACGTTACCCTTGTCCCT
LOC_Os04g52290
Os.4898.1.S1_at--452--3011Chr04:30854732..30854756 (25 bp)
AATGCAAATGGCTCGTTCTTGGATA
LOC_Os04g52290
Os.4898.1.S1_at--1050--10071Chr04:30854709..30854733 (25 bp)
TAGGAGTCAGTGACCCATTCCATTC
LOC_Os04g52290
Target Sequence 
CACCGGTTCAGGAAGCGTATGCTCTACTATGGGGTGGTGCCGCGCCGCATCAAGCTAGTGACTGGACCAACGCTCAAGAT
GGTGGTGGCGCAGGTGCTGGCGTCGCTGGAGTCCCCCTTTGAGGTGAGCAAGGTGGTGCTGCGGGCGCCAGGTGACTCGG
TGCTCGAGTGGTTCAAGAAGCCGATCGTGCAGCAGTTCCTGCTCAACGAGATACCATCCAAGGCTGACGTCCTGATGCAC
AGGCTCAACGTGATGTTNCCAAGTTNGGCGCCGGAGGTCCGATCGCTCTCTATCCCCAGGTCCCTTAGTATGTCAAGGTG
ATGATGTCTATCTCTGTAGTACGTCGTTTTAGCTTCATTCAAGNAGAATCCATATTGGCATATTGTATANTAGTATAACT
TTTTTGTCCAACCATCAGAGTGAGAACGTTACCCTTGTCCCTGTGTACAAGTACAGTAATGCTTTNTTGCAAAATGCAAA
TGGCTCGTTCTTGGATAGGAGTCAGTGACCCATTCCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis