Browse Element(s) Details


Os.38235.2.S1_x_at

Description gb:AK062295.1
DB_XREF= gi:32972313
TID=Os.38235.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38235 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F05, full insert sequence.
FL= gb:AK062295.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5226010/11Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g522501/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52240OsAffx.14376.1.S1_at11/114+30815974..30824354Terpene synthase family, metal binding domain containing protein
LOC_Os04g52250Os.38235.1.S1_x_at1/114+30832100..30832969transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g52250Os.38235.2.S1_x_at1/114+30832100..30832969transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g52260Os.38235.1.S1_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.2.S1_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.1.S1_x_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.2.S1_x_at10/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52270Os.3437.1.S1_at11/114+30844804..30849804coatomer epsilon subunit, putative, expressed
LOC_Os04g52280Os.32904.1.S1_at11/114+30850553..30854787mannitol dehydrogenase, putative, expressed
LOC_Os04g52290Os.4898.1.S1_at11/114+30854574..30857262pentatricopeptide, putative, expressed
LOC_Os04g52300Os.9807.1.S1_at11/114+30857445..30858798expressed protein
LOC_Os04g52310Os.18572.1.S1_at11/114+30859134..30861473ZIP zinc/iron transport family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38235.2.S1_x_at--944--2951NONE
AAGGCCAAGGCGTTCGGCGTCAGCC
NONE
Os.38235.2.S1_x_at--269--6691Chr04:30843063..30843251 (25 bp)
GTTGCCATCTCCCTGCATAATTAAT
LOC_Os04g52260
Os.38235.2.S1_x_at--878--10051Chr04:30843257..30843281 (25 bp)
TAGTTTATCACCTGGCTATGCTATA
LOC_Os04g52260
Os.38235.2.S1_x_at--639--332Chr04:30843318..30843342 (25 bp)
ATACATGAGCTCTGACTTGTGTCAT
LOC_Os04g52260
Os.38235.2.S1_x_at--297--5012Chr04:30843359..30843383 (25 bp)
GCATGGAGCCTTGGATTGTGCATTT
LOC_Os04g52260
Os.38235.2.S1_x_at--870--231Chr04:30843412..30843436 (25 bp)
ATATATTTTGCTGTGTCATGCATAT
LOC_Os04g52260
Os.38235.2.S1_x_at--656--9591Chr04:30843545..30843569 (25 bp)
TCATATGTATATGTGTGGCTGATAA
LOC_Os04g52260
Os.38235.2.S1_x_at--844--8331Chr04:30843561..30843585 (25 bp)
GGCTGATAAAGCCTGTCATTCTGTC
LOC_Os04g52260
Os.38235.2.S1_x_at--942--1671Chr04:30843570..30843594 (25 bp)
AGCCTGTCATTCTGTCAACTTTCAT
LOC_Os04g52260
Os.38235.2.S1_x_at--942--7131Chr04:30843575..30843599 (25 bp)
GTCATTCTGTCAACTTTCATATATA
LOC_Os04g52260
Os.38235.2.S1_x_at--561--6851Chr04:30843600..30843624 (25 bp)
GTATAAAACGTGCTATGTTGTGCTT
LOC_Os04g52260
Target Sequence 
AAGGCCAAGGCGTTCGGCGTCAGCCTCGTCCTCCCCGTTGCCATCTCCCTGCATAATTAATAAGTATAGTTTATCACCTG
GCTATGCTATATACATATAAATATATATAGTGACATATGTAGCATATATACATGAGCTCTGACTTGTGTCATGGAGATGT
GGAGGCATGCATGGAGCCTTGGATTGTGCATTTAATTGATGTATAATAATATTTGTGTAACATATATTTTGCTGTGTCAT
GCATATATGCATGTGGAGTTGTGGTATTTGGTTTGTAGTGGTTTGGGAGATTTATTATGAAATAAAGAGTGTGTGATATG
TATGCTATGAAATACAAAGTTTGATGTGTATGTATCATATGTATATGTGTGGCTGATAAAGCCTGTCATTCTGTCAACTT
TCATATATAGTATAAAACGTGCTATGTTGTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38235.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis