Browse Element(s) Details


OsAffx.26570.1.S1_at

Description tigr:9632.m05056
TID=OsAffx.26570.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5222011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52180Os.12293.1.S1_a_at11/114+30781064..30782827expressed protein
LOC_Os04g52180OsAffx.4153.1.S1_s_at11/114+30781064..30782827expressed protein
LOC_Os04g52190Os.27799.1.S1_at11/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52190OsAffx.24964.2.S1_s_at2/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52200OsAffx.14374.1.S1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200OsAffx.14374.1.S1_x_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200Os.36109.1.A1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52210OsAffx.14375.1.S1_at11/114+30800291..30805182Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g52220OsAffx.26570.1.S1_at11/114+30805568..30805981hypothetical protein
LOC_Os04g52230OsAffx.27508.22.S1_s_at11/114+30808288..30812175Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g52240OsAffx.14376.1.S1_at11/114+30815974..30824354Terpene synthase family, metal binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26570.1.S1_at--175--1791Chr04:30805605..30805629 (25 bp)
ACCGATCGGGCGTTCTCCTAGAGGC
LOC_Os04g52220
OsAffx.26570.1.S1_at--569--7051Chr04:30805649..30805673 (25 bp)
GTAACAGCTAGAGTGCCCATAGGCA
LOC_Os04g52220
OsAffx.26570.1.S1_at--699--791Chr04:30805675..30805699 (25 bp)
ATGGGCTAGCTATACACCACGTGGT
LOC_Os04g52220
OsAffx.26570.1.S1_at--591--6211Chr04:30805711..30805735 (25 bp)
GAGGCTCTCCAATTATCTGTTACTA
LOC_Os04g52220
OsAffx.26570.1.S1_at--1104--9431Chr04:30805726..30805750 (25 bp)
TCTGTTACTAGCAAAGTCGGACTAC
LOC_Os04g52220
OsAffx.26570.1.S1_at--311--3291Chr04:30805782..30805806 (25 bp)
CAAAGCGTGTTGCATGTAGGGTATC
LOC_Os04g52220
OsAffx.26570.1.S1_at--1072--7671Chr04:30805800..30805824 (25 bp)
GGGTATCATCGAGTTGGGCCGCATC
LOC_Os04g52220
OsAffx.26570.1.S1_at--297--4131Chr04:30805819..30805843 (25 bp)
CGCATCGAGCTCCACGAGATGTGAT
LOC_Os04g52220
OsAffx.26570.1.S1_at--587--7191Chr04:30805847..30805871 (25 bp)
GTCGGATGCCATCTACAGCGTCGTC
LOC_Os04g52220
OsAffx.26570.1.S1_at--501--2331Chr04:30805877..30805901 (25 bp)
AAAGATGATCTCAACGCTGACACCA
LOC_Os04g52220
OsAffx.26570.1.S1_at--206--1072Chr04:30805901..30805925 (25 bp)
AGGGTCGCCAACATCGAGATCATCT
LOC_Os04g52220
Target Sequence 
ACCGATCGGGCGTTCTCCTAGAGGCTCCGGCAGCCGCCCCTCGGGTAACAGCTAGAGTGCCCATAGGCAGATGGGCTAGC
TATACACCACGTGGTCAAGGAGGCGAGAGGCTCTCCAATTATCTGTTACTAGCAAAGTCGGACTACAATGATGTCTTTGT
TGATGAAGATCAAGCTACAAAGCGTGTTGCATGTAGGGTATCATCGAGTTGGGCCGCATCGAGCTCCACGAGATGTGATG
GCGTCGGATGCCATCTACAGCGTCGTCCCACCAAAGATGATCTCAACGCTGACACCAGGGTCGCCAACATCGAGATCATC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis