Browse Element(s) Details


Os.27799.1.S1_at

Description gb:AK105614.1
DB_XREF= gi:32990823
TID=Os.27799.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.27799 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B09, full insert sequence.
FL= gb:AK105614.1 gb:AK069344.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5219011/11Vacuolar sorting receptor 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52140Os.14963.1.S1_at11/114+30755091..30760771Protein kinase domain containing protein, expressed
LOC_Os04g52152NANA4+30763430..30764984NA
LOC_Os04g52164Os.22810.1.S1_at11/114+30776280..30780523ZMGLOSSY, putative, expressed
LOC_Os04g52180Os.12293.1.S1_a_at11/114+30781064..30782827expressed protein
LOC_Os04g52180OsAffx.4153.1.S1_s_at11/114+30781064..30782827expressed protein
LOC_Os04g52190Os.27799.1.S1_at11/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52190OsAffx.24964.2.S1_s_at2/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52200OsAffx.14374.1.S1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200OsAffx.14374.1.S1_x_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200Os.36109.1.A1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52210OsAffx.14375.1.S1_at11/114+30800291..30805182Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g52220OsAffx.26570.1.S1_at11/114+30805568..30805981hypothetical protein
LOC_Os04g52230OsAffx.27508.22.S1_s_at11/114+30808288..30812175Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006623biological_processprotein targeting to vacuole
GO:0006886biological_processintracellular protein transport
GO:0005802cellular_componentGolgi trans face
GO:0005887cellular_componentintegral to plasma membrane
GO:0017119cellular_componentGolgi transport complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27799.1.S1_at--39--7911Chr04:30787515..30787539 (25 bp)
GGTTCGTTCGACTGCAGCTGCCATG
LOC_Os04g52190
Os.27799.1.S1_at--371--851Chr04:30787537..30787561 (25 bp)
ATGGCAACAACCTGATGTACATCAA
LOC_Os04g52190
Os.27799.1.S1_at--1041--7231Chr04:30787757..30787781 (25 bp)
GTCGCCGGATACGTGTTCTACAAGT
LOC_Os04g52190
Os.27799.1.S1_at--596--10571Chr04:30787772..30787792 (21 bp)
TTCTACAAGTACAGGCTCAGGAGGT
LOC_Os04g52190
Os.27799.1.S1_at--934--1171Chr04:30787953..30787977 (25 bp)
AGTACATGCCTCTCGAGGGCCAGAA
LOC_Os04g52190
Os.27799.1.S1_at--933--6191Chr04:30788003..30788027 (25 bp)
GAGGCCCAGGTTGAGCATGCTTAGC
LOC_Os04g52190
Os.27799.1.S1_at--828--751Chr04:30788183..30788207 (25 bp)
ATGTCCATTCGTTTTGAGACGCCAA
LOC_Os04g52190
Os.27799.1.S1_at--830--671Chr04:30788213..30788237 (25 bp)
ATGACAGCGACGAATGCCGCGATGT
LOC_Os04g52190
Os.27799.1.S1_at--1006--7011Chr04:30788236..30788260 (25 bp)
GTACATGGCGAAGTTCAGACATCAT
LOC_Os04g52190
Os.27799.1.S1_at--233--3451Chr04:30788282..30788306 (25 bp)
CAGTTTCTGCTTGGTGCTTTTGTAG
LOC_Os04g52190
Os.27799.1.S1_at--1083--9771Chr04:30788352..30788376 (25 bp)
TAAGTCTATGTCAAGCCGGTGCACC
LOC_Os04g52190
Target Sequence 
GGTTCGTTCGACTGCAGCTGCCATGGCAACAACCTGATGTACATCAAAGCTGAAGATACCTGCATTGCGAAGAACATGTC
GGCGTTTGGGTGGCTGGTGACGACGCTGGTGCTGTCCTGCCTCGCCGGCGCCGGCGTCGCCGGATACGTGTTCTACAAGT
ACAGGCTCAGGAGGTACATGGATTCAGAGGTGATGGCGATCATGTCGCAGTACATGCCTCTCGAGGGCCAGAACGGCGAG
AGGCTGCCGCTGAGAGAGGAGGCCCAGGTTGAGCATGCTTAGCTAGGCAGTTGCAGAGGTTGAACATTTTGGCAATGTCC
ATTCGTTTTGAGACGCCAAGACACATGACAGCGACGAATGCCGCGATGTACATGGCGAAGTTCAGACATCATACTTGATG
ACAGGGGTTCTTGCAGTTTCTGCTTGGTGCTTTTGTAGAGAACTGAACCAGATAGGTTCAGAGTTTCTGGTAGAAGAACG
GGATAAGTCTATGTCAAGCCGGTGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis