Browse Element(s) Details


Os.14963.1.S1_at

Description gb:AK120898.1
DB_XREF= gi:37990521
TID=Os.14963.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030I02, full insert sequence.
FL= gb:AK120898.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5214011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52110Os.53526.1.S1_at11/114+30731863..30733038Late embryogenesis abundant protein, expressed
LOC_Os04g52120Os.53894.1.S1_x_at11/114+30733425..30738538Potassium transporter 7, putative, expressed
LOC_Os04g52130Os.17919.1.S1_at11/114+30742528..30746340Coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed
LOC_Os04g52140Os.14963.1.S1_at11/114+30755091..30760771Protein kinase domain containing protein, expressed
LOC_Os04g52152NANA4+30763430..30764984NA
LOC_Os04g52164Os.22810.1.S1_at11/114+30776280..30780523ZMGLOSSY, putative, expressed
LOC_Os04g52180Os.12293.1.S1_a_at11/114+30781064..30782827expressed protein
LOC_Os04g52180OsAffx.4153.1.S1_s_at11/114+30781064..30782827expressed protein
LOC_Os04g52190Os.27799.1.S1_at11/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52190OsAffx.24964.2.S1_s_at2/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14963.1.S1_at--784--8451Chr04:30760037..30760058 (22 bp)
TGGCCTAAGCCCTGCACAAGTAGTA
LOC_Os04g52140
Os.14963.1.S1_at--450--1471Chr04:30760170..30760194 (25 bp)
AGAAGGCTCCCAATTCCACAAGAGA
LOC_Os04g52140
Os.14963.1.S1_at--110--2791Chr04:30760189..30760213 (25 bp)
AAGAGACAGTCCCTGAGCTAGCTGC
LOC_Os04g52140
Os.14963.1.S1_at--1096--3831Chr04:30760210..30760234 (25 bp)
CTGCTCTTGTTGAATCCTGCTGGGA
LOC_Os04g52140
Os.14963.1.S1_at--433--711Chr04:30760355..30760378 (24 bp)
ATGATCCAAGGCAGCGACCGTCGTT
LOC_Os04g52140
Os.14963.1.S1_at--73--1791Chr04:30760370..30760394 (25 bp)
ACCGTCGTTTTCGAGCATCGTGGAC
LOC_Os04g52140
Os.14963.1.S1_at--757--2271Chr04:30760413..30760437 (25 bp)
AAATCGATGCTTGGTGGCTCATGAC
LOC_Os04g52140
Os.14963.1.S1_at--956--8591Chr04:30760454..30760478 (25 bp)
TGGTCGCCTTCTTATTTTTGTTCTC
LOC_Os04g52140
Os.14963.1.S1_at--494--4971Chr04:30760591..30760615 (25 bp)
GCATCGAGTTCGTTAGGTCACCTTT
LOC_Os04g52140
Os.14963.1.S1_at--155--9111Chr04:30760670..30760694 (25 bp)
TGCTCCTCTTTTTCTCTGGATTGAA
LOC_Os04g52140
Os.14963.1.S1_at--813--1311Chr04:30760738..30760762 (25 bp)
AGATGGTCATGATTCGCTCGGTTTA
LOC_Os04g52140
Target Sequence 
TGGCCTAAGCCCTGCACAAGTAGTAGGAGCAGTTGCATTCCAGAACAGAAGGCTCCCAATTCCACAAGAGACAGTCCCTG
AGCTAGCTGCTCTTGTTGAATCCTGCTGGGATGATGATCCAAGGCAGCGACCGTCGTTTTCGAGCATCGTGGACACGCTG
AAGAAGTTGCTCAAATCGATGCTTGGTGGCTCATGACGAATACTGAAGACTGTTGGTCGCCTTCTTATTTTTGTTCTCCC
TGTTAATGTTAATCTACANGCAAANCAATAAGTTGGTAAGTCAGTTGCCTTAAAGGCATCTGAGTTCTCTACAGAAAGGA
GAGGATAGTTGAAGCAGCACAAGTCCAATGCTGCATCGAGTTCGTTAGGTCACCTTTTTTTTTTCCTCCGTTTTCCGCAT
GAGAAACTAATATCTAAAAAATATTGTTTTTTGCTCCTCTTTTTCTCTGGATTGAATTTTGTACAGTGCATACAAATTTG
AAATTAATGTGCAGAATTNAGATGGTCATGATTCGCTCGGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis