Browse Element(s) Details


Os.22810.1.S1_at

Description gb:CB655056
DB_XREF= gi:29658781
DB_XREF=OSJNEc08B19.r
CLONE=OSJNEc08B19
TID=Os.22810.1
CNT=15
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.22810 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566741.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5216411/11ZMGLOSSY, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52140Os.14963.1.S1_at11/114+30755091..30760771Protein kinase domain containing protein, expressed
LOC_Os04g52152NANA4+30763430..30764984NA
LOC_Os04g52164Os.22810.1.S1_at11/114+30776280..30780523ZMGLOSSY, putative, expressed
LOC_Os04g52180Os.12293.1.S1_a_at11/114+30781064..30782827expressed protein
LOC_Os04g52180OsAffx.4153.1.S1_s_at11/114+30781064..30782827expressed protein
LOC_Os04g52190Os.27799.1.S1_at11/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52190OsAffx.24964.2.S1_s_at2/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52200OsAffx.14374.1.S1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200OsAffx.14374.1.S1_x_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200Os.36109.1.A1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52210OsAffx.14375.1.S1_at11/114+30800291..30805182Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0005634cellular_componentnucleus
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22810.1.S1_at--57--4271Chr04:30780147..30780171 (25 bp)
CCGGCGATCCGGCTGGTATGAAATT
LOC_Os04g52164
Os.22810.1.S1_at--126--10631Chr04:30780171..30780195 (25 bp)
TTCGACGAGCGTAGGACAATCTTGG
LOC_Os04g52164
Os.22810.1.S1_at--551--10091Chr04:30780182..30780206 (25 bp)
TAGGACAATCTTGGCGCCTCTTTTT
LOC_Os04g52164
Os.22810.1.S1_at--276--9951Chr04:30780218..30780242 (25 bp)
TACGAAGTCTGTACTGTATCATGAT
LOC_Os04g52164
Os.22810.1.S1_at--83--4031Chr04:30780247..30780271 (25 bp)
CGTAATAAGTTGTTCGAGTGCCAGA
LOC_Os04g52164
Os.22810.1.S1_at--786--9871Chr04:30780335..30780359 (25 bp)
TACTTTTGGGCGTACGGTAATTCAG
LOC_Os04g52164
Os.22810.1.S1_at--846--1391Chr04:30780380..30780404 (25 bp)
AGACTGGGTAATTCACTGGGATCAA
LOC_Os04g52164
Os.22810.1.S1_at--290--7671Chr04:30780397..30780421 (25 bp)
GGGATCAAGCATTGTTACTACGGTT
LOC_Os04g52164
Os.22810.1.S1_at--299--131Chr04:30780424..30780448 (25 bp)
ATTCAGATGAGATTTATACCGGTAG
LOC_Os04g52164
Os.22810.1.S1_at--565--9971Chr04:30780440..30780464 (25 bp)
TACCGGTAGAATTCAGATCAAGCAT
LOC_Os04g52164
Os.22810.1.S1_at--930--6451Chr04:30780455..30780479 (25 bp)
GATCAAGCATTTGCTACTGCTAGTA
LOC_Os04g52164
Target Sequence 
CCGGCGATCCGGCTGGTATGAAATTTCGACGAGCGTAGGACAATCTTGGCGCCTCTTTTTTCTNTGGAATTTACGAAGTC
TGTACTGTATCATGATGTACCGTAATAAGTTGTTCGAGTGCCAGAATGGAAATGCAGTGTTATATACCACAGTATACTTG
TCAGAAATTCAGAATACATTATTGTAAGTACTTTTGGGCGTACGGTAATTCAGATCAAGCATTATTATTTTTTAGACTGG
GTAATTCACTGGGATCAAGCATTGTTACTACGGTTGAATTCAGATGAGATTTATACCGGTAGAATTCAGATCAAGCATTT
GCTACTGCTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis