Browse Element(s) Details


OsAffx.14374.1.S1_x_at

Description tigr:9632.m05053
TID=OsAffx.14374.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5220011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52152NANA4+30763430..30764984NA
LOC_Os04g52164Os.22810.1.S1_at11/114+30776280..30780523ZMGLOSSY, putative, expressed
LOC_Os04g52180Os.12293.1.S1_a_at11/114+30781064..30782827expressed protein
LOC_Os04g52180OsAffx.4153.1.S1_s_at11/114+30781064..30782827expressed protein
LOC_Os04g52190Os.27799.1.S1_at11/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52190OsAffx.24964.2.S1_s_at2/114+30784767..30789016Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os04g52200OsAffx.14374.1.S1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200OsAffx.14374.1.S1_x_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52200Os.36109.1.A1_at11/114+30788443..30794839RNA recognition motif family protein, expressed
LOC_Os04g52210OsAffx.14375.1.S1_at11/114+30800291..30805182Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g52220OsAffx.26570.1.S1_at11/114+30805568..30805981hypothetical protein
LOC_Os04g52230OsAffx.27508.22.S1_s_at11/114+30808288..30812175Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g52240OsAffx.14376.1.S1_at11/114+30815974..30824354Terpene synthase family, metal binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14374.1.S1_x_at--55--6531Chr04:30789573..30789597 (25 bp)
GATTTGGCTTTGTTGAGTTCGACTC
LOC_Os04g52200
OsAffx.14374.1.S1_x_at--669--631Chr04:30789397..30789421 (25 bp)
ATGCTTTGATCTTGCAACTGTGTCA
LOC_Os04g52200
OsAffx.14374.1.S1_x_at--1092--2411Chr04:30789321..30789345 (25 bp)
AAAACTCCTCGTGCGGAATGTAGCA
LOC_Os04g52200
OsAffx.14374.1.S1_x_at--728--4691Chr04:30789273..30789297 (25 bp)
GCGGCAATTATTTAGCCCATTTGGC
LOC_Os04g52200
OsAffx.14374.1.S1_x_at--549--1271Chr04:30789015..30789039 (25 bp)
AGATCAAAAGCCTCAGACTGCCTAT
LOC_Os04g52200
OsAffx.14374.1.S1_x_at--681--2731Chr04:30788944..30788968 (25 bp)
AAGCAAGAGGCGCAGAACGCTCTCC
LOC_Os04g52200
OsAffx.14374.1.S1_x_at--768--1431Chr04:30788931..30788955 (25 bp)
AGAACGCTCTCCAAGCACTTGCGAG
LOC_Os04g52200
OsAffx.14374.1.S1_x_at--249--451Chr04:30788904..30788925 (22 bp)
ATCTCTACGGGCGACATTTGGTGAT
LOC_Os04g52200
OsAffx.14374.1.S1_x_at--72--8111Chr04:30788735..30788759 (25 bp)
GGACCGCTGCTCAGTTTGTTGATGA
LOC_Os04g52200
OsAffx.14374.1.S1_x_at--373--7511Chr04:30788705..30788729 (25 bp)
GTGGTTTCCAGAGGCTATCCAAGAA
LOC_Os04g52200
OsAffx.14374.1.S1_x_at--511--2731Chr04:30788676..30788700 (25 bp)
AAGCAAACCAGCCTTGTGGACGAAG
LOC_Os04g52200
Target Sequence 
GATTTGGCTTTGTTGAGTTCGACTCAGTTGAAACTGCAACCAGTGTCTGCAAGGATCTACAGGGAACGGTTTTGGATGGA
CATGCTTTGATCTTGCAACTGTGTCATGGGAGAAAAGATGGTCAGACTAAGAAAAATGAAAAGGATAAGAGTTCAACAAA
ACTCCTCGTGCGGAATGTAGCATTTGAAGCAACTGAAAAGGACTTGCGGCAATTATTTAGCCCATTTGGCCAGATCAAAA
GCCTCAGACTGCCTATGAAGTTTGGGAGTCACAGGGGTTTCGCATTTGTTGAATTCGTCACAAAGCAAGAGGCGCAGAAC
GCTCTCCAAGCACTTGCGAGCACTCATCTCTACGGGCGACATTTGGTGATCGAGCGAGCTAAGGAAGGAGAGACTCTTGA
AGAACTACGAGCGAGGACCGCTGCTCAGTTTGTTGATGAACAGAGTGGTTTCCAGAGGCTATCCAAGAAGAGAAAGCAAA
CCAGCCTTGTGGACGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14374.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis