Browse Element(s) Details


Os.53526.1.S1_at

Description gb:AK073109.1
DB_XREF= gi:32983132
TID=Os.53526.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033022D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022D23, full insert sequence.
FL= gb:AK073109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5211011/11Late embryogenesis abundant protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52074Os.23898.1.S1_at11/114+30708554..30715020expressed protein
LOC_Os04g52090OsAffx.14373.1.S1_s_at11/114+30720101..30721198AP2 domain containing protein, expressed
LOC_Os04g52100Os.10727.1.S1_at11/114+30726099..30729615Methionine aminopeptidase, putative, expressed
LOC_Os04g52110Os.53526.1.S1_at11/114+30731863..30733038Late embryogenesis abundant protein, expressed
LOC_Os04g52120Os.53894.1.S1_x_at11/114+30733425..30738538Potassium transporter 7, putative, expressed
LOC_Os04g52130Os.17919.1.S1_at11/114+30742528..30746340Coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed
LOC_Os04g52140Os.14963.1.S1_at11/114+30755091..30760771Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53526.1.S1_at--768--5311Chr04:30732600..30732624 (25 bp)
GAAGGGACGAAGCACGCCGGCGAGA
LOC_Os04g52110
Os.53526.1.S1_at--459--1531Chr04:30732799..30732823 (25 bp)
AGCAGGACAGGATCGCGCAGGAGGA
LOC_Os04g52110
Os.53526.1.S1_at--1073--2871Chr04:30732846..30732870 (25 bp)
AAGGGCGCTGGCTTGCCTTAGGCTA
LOC_Os04g52110
Os.53526.1.S1_at--482--4911Chr04:30732856..30732880 (25 bp)
GCTTGCCTTAGGCTAAAACTGCATA
LOC_Os04g52110
Os.53526.1.S1_at--30--2431Chr04:30732870..30732894 (25 bp)
AAAACTGCATACTTGTTGCATGCTT
LOC_Os04g52110
Os.53526.1.S1_at--261--3631Chr04:30732881..30732905 (25 bp)
CTTGTTGCATGCTTATTTGTACTAA
LOC_Os04g52110
Os.53526.1.S1_at--660--10871Chr04:30732961..30732985 (25 bp)
TTGGCAAACTTGAGCCTCCTAATGT
LOC_Os04g52110
Os.53526.1.S1_at--947--2511Chr04:30732967..30732991 (25 bp)
AACTTGAGCCTCCTAATGTCTGTAA
LOC_Os04g52110
Os.53526.1.S1_at--10--8931Chr04:30732971..30732995 (25 bp)
TGAGCCTCCTAATGTCTGTAAGACT
LOC_Os04g52110
Os.53526.1.S1_at--537--5691Chr04:30732992..30733016 (25 bp)
GACTGTAACTGTAATGGAAAGGAAC
LOC_Os04g52110
Os.53526.1.S1_at--1143--2511Chr04:30733014..30733038 (25 bp)
AACTTATTGAAGTTATTAGCCATGC
LOC_Os04g52110
Target Sequence 
GAAGGGACGAAGCACGCCGGCGAGAAGGTGGCGGAGATGACCAAGGAAGGGGCGAGCAAGGTGGTGGAGACGGCGCAGGC
CATCGGCGAGAAGGCGAAGCAGGCGGCGCAGGGCGCGTGGGGCGCCACCAAGGAGGCGGCGCAGGGCGTCAAGGACACGG
TCGCCGGCGGCGACGTCGACGCCGACGCCGCGATGAAGGAGCAGGACAGGATCGCGCAGGAGGAGAAGAAGAGGCAGGCC
AGGGAGAAGGGCGCTGGCTTGCCTTAGGCTAAAACTGCATACTTGTTGCATGCTTATTTGTACTAAAAGCTTTTTTTTTT
AGCTGAATTTTAGTCGGNTTCAGTTCTTNTTGGTTGAATAATGTTGGCAAACTTGAGCCTCCTAATGTCTGTAAGACTGT
AACTGTAATGGAAAGGAACTTATTGAAGTTATTAGCCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis