Browse Element(s) Details


OsAffx.14373.1.S1_s_at

Description tigr:9632.m05041
TID=OsAffx.14373.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5209011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52050Os.27082.1.S1_at11/114+30695142..30700241expressed protein
LOC_Os04g52060OsAffx.26569.1.S1_x_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060Os.20706.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060OsAffx.26569.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52074Os.23898.1.S1_at11/114+30708554..30715020expressed protein
LOC_Os04g52090OsAffx.14373.1.S1_s_at11/114+30720101..30721198AP2 domain containing protein, expressed
LOC_Os04g52100Os.10727.1.S1_at11/114+30726099..30729615Methionine aminopeptidase, putative, expressed
LOC_Os04g52110Os.53526.1.S1_at11/114+30731863..30733038Late embryogenesis abundant protein, expressed
LOC_Os04g52120Os.53894.1.S1_x_at11/114+30733425..30738538Potassium transporter 7, putative, expressed
LOC_Os04g52130Os.17919.1.S1_at11/114+30742528..30746340Coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009864biological_processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14373.1.S1_s_at--233--3231Chr04:30720759..30720783 (25 bp)
CAAGAAGGAGGTAGCTCGCCTGGAC
LOC_Os04g52090
OsAffx.14373.1.S1_s_at--774--3911Chr04:30720778..30720802 (25 bp)
CTGGACGAGCAGAGCGACACCGGCT
LOC_Os04g52090
OsAffx.14373.1.S1_s_at--98--6671Chr04:30720886..30720910 (25 bp)
GTTGCAGCGCCCGATGACGACGACA
LOC_Os04g52090
OsAffx.14373.1.S1_s_at--468--2731Chr04:30720920..30720944 (25 bp)
CACAAATCCCTCGTAGAAAAGTCTA
LOC_Os04g52090
OsAffx.14373.1.S1_s_at--705--2311Chr04:30720937..30720961 (25 bp)
AAAGTCTAGAGCGACGTGTAATAGT
LOC_Os04g52090
OsAffx.14373.1.S1_s_at--129--7891Chr04:30720966..30720990 (25 bp)
GGTTAATCGTCCGTTTAATTGCCAG
LOC_Os04g52090
OsAffx.14373.1.S1_s_at--593--10691Chr04:30720984..30721008 (25 bp)
TTGCCAGGATTGATCAACTAGGTGT
LOC_Os04g52090
OsAffx.14373.1.S1_s_at--562--2511Chr04:30720999..30721023 (25 bp)
AACTAGGTGTACATAGATCGTGTCC
LOC_Os04g52090
OsAffx.14373.1.S1_s_at--577--291Chr04:30721011..30721035 (25 bp)
ATAGATCGTGTCCTTTTTGCACGGG
LOC_Os04g52090
OsAffx.14373.1.S1_s_at--589--6171Chr04:30721047..30721071 (25 bp)
GAGGAAAAGGCTACTACTCCCGGTG
LOC_Os04g52090
OsAffx.14373.1.S1_s_at--470--9871Chr04:30721058..30721082 (25 bp)
TACTACTCCCGGTGTTACAGTTCCT
LOC_Os04g52090
Target Sequence 
CAAGAAGGAGGTAGCTCGCCTGGACGAGCAGAGCGACACCGGCTCGTCGTCATCCGTGGTGGACGCCTCGCCGGCCGTCG
GCGTGGGGCTCGACCTGAACCTGCCGCCGCCGATCGAGGAGGCGTAGGTTGCAGCGCCCGATGACGACGACAAGACCCCC
CCACAAATCCCTCGTAGAAAAGTCTAGAGCGACGTGTAATAGTAAGAGGTTAATCGTCCGTTTAATTGCCAGGATTGATC
AACTAGGTGTACATAGATCGTGTCCTTTTTGCACGGGGAGATAGGTATGAGGAAAAGGCTACTACTCCCGGTGTTACAGT
TCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14373.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis