Browse Element(s) Details


Os.10727.1.S1_at

Description gb:AK066289.1
DB_XREF= gi:32976307
TID=Os.10727.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-040-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013063M01, full insert sequence.
FL= gb:AK104817.1 gb:AK066289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5210011/11Methionine aminopeptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52060OsAffx.26569.1.S1_x_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060Os.20706.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060OsAffx.26569.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52074Os.23898.1.S1_at11/114+30708554..30715020expressed protein
LOC_Os04g52090OsAffx.14373.1.S1_s_at11/114+30720101..30721198AP2 domain containing protein, expressed
LOC_Os04g52100Os.10727.1.S1_at11/114+30726099..30729615Methionine aminopeptidase, putative, expressed
LOC_Os04g52110Os.53526.1.S1_at11/114+30731863..30733038Late embryogenesis abundant protein, expressed
LOC_Os04g52120Os.53894.1.S1_x_at11/114+30733425..30738538Potassium transporter 7, putative, expressed
LOC_Os04g52130Os.17919.1.S1_at11/114+30742528..30746340Coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016485biological_processprotein processing
GO:0031365biological_processN-terminal protein amino acid modification
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004239molecular_functionmethionyl aminopeptidase activity
GO:0008235molecular_functionmetalloexopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10727.1.S1_at--544--391Chr04:30726637..30726792 (25 bp)
ATCACCAGCGTAATAATATGCCAGG
LOC_Os04g52100
Os.10727.1.S1_at--90--5691Chr04:30726484..30726618 (25 bp)
GACATTCACAATAGAACCGGCCCTA
LOC_Os04g52100
Os.10727.1.S1_at--1081--8391Chr04:30726466..30726490 (25 bp)
GGCCCTATCCATGGGAAGCATTGAT
LOC_Os04g52100
Os.10727.1.S1_at--49--3611Chr04:30726448..30726472 (25 bp)
CATTGATTGCGACATGTGGGACGAC
LOC_Os04g52100
Os.10727.1.S1_at--990--5931Chr04:30726378..30726402 (25 bp)
GAGCACACGATACTGATTACCAAGA
LOC_Os04g52100
Os.10727.1.S1_at--193--5591Chr04:30726345..30726369 (25 bp)
GAAATCCTCACGAAATGCTAGTAAG
LOC_Os04g52100
Os.10727.1.S1_at--739--3691Chr04:30726328..30726352 (25 bp)
CTAGTAAGATCGGTGCCCAGCATTA
LOC_Os04g52100
Os.10727.1.S1_at--964--7291Chr04:30726316..30726340 (25 bp)
GTGCCCAGCATTAGCCACTGGAGTA
LOC_Os04g52100
Os.10727.1.S1_at--105--3471Chr04:30726290..30726314 (25 bp)
CAGTGATCTCTGTGTTTGTAGGACG
LOC_Os04g52100
Os.10727.1.S1_at--479--7991Chr04:30726252..30726276 (25 bp)
GGATGGTCGATTGTTTTGCTGTATA
LOC_Os04g52100
Os.10727.1.S1_at--351--9131Chr04:30726236..30726260 (25 bp)
TGCTGTATAAAGTACTCCCTCTGTA
LOC_Os04g52100
Target Sequence 
ATCACCAGCGTAATAATATGCCAGGTCAAATGGTTGAAGGCCAGACATTCACAATAGAACCGGCCCTATCCATGGGAAGC
ATTGATTGCGACATGTGGGACGACGGCTGGACGGCCGTCACGACGGACGGCAGCCTAGCCGCGCAGTTCGAGCACACGAT
ACTGATTACCAAGACAGGAGCAGAAATCCTCACGAAATGCTAGTAAGATCGGTGCCCAGCATTAGCCACTGGAGTAGCAG
TGATCTCTGTGTTTGTAGGACGAGTATGGTGGAAAGGATGGTCGATTGTTTTGCTGTATAAAGTACTCCCTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis