Browse Element(s) Details


Os.20706.1.S1_at

Description gb:AK062284.1
DB_XREF= gi:32972302
TID=Os.20706.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20706 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D01, full insert sequence.
FL= gb:AK062284.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5206011/11Transposable element protein, putative, Transposase_24, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52020Os.14486.1.S1_at11/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52020Os.50538.1.S1_at2/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52030OsAffx.26568.1.S1_at11/114+30685461..30688586zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.2.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.2.S1_s_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52050Os.27082.1.S1_at11/114+30695142..30700241expressed protein
LOC_Os04g52060OsAffx.26569.1.S1_x_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060Os.20706.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060OsAffx.26569.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52074Os.23898.1.S1_at11/114+30708554..30715020expressed protein
LOC_Os04g52090OsAffx.14373.1.S1_s_at11/114+30720101..30721198AP2 domain containing protein, expressed
LOC_Os04g52100Os.10727.1.S1_at11/114+30726099..30729615Methionine aminopeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20706.1.S1_at--812--7411Chr04:30702115..30702336 (25 bp)
GTGTTGATCATGAGCATGCCCCTGG
LOC_Os04g52060
Os.20706.1.S1_at--83--6651Chr04:30702113..30702334 (25 bp)
GTTGATCATGAGCATGCCCCTGGGT
LOC_Os04g52060
Os.20706.1.S1_at--1056--2671Chr04:30701646..30701670 (25 bp)
AAGCGATTGATCTGCCTCGCCGCGT
LOC_Os04g52060
Os.20706.1.S1_at--136--51Chr04:30701641..30701665 (25 bp)
ATTGATCTGCCTCGCCGCGTAGAAT
LOC_Os04g52060
Os.20706.1.S1_at--467--4211Chr04:30701627..30701651 (25 bp)
CCGCGTAGAATTTTGGCCATGTAAT
LOC_Os04g52060
Os.20706.1.S1_at--755--8431Chr04:30701613..30701637 (25 bp)
GGCCATGTAATATATAAACCTGCGT
LOC_Os04g52060
Os.20706.1.S1_at--11--7071Chr04:30701607..30701631 (25 bp)
GTAATATATAAACCTGCGTCTAATG
LOC_Os04g52060
Os.20706.1.S1_at--1087--6331Chr04:30701553..30701577 (25 bp)
GATGCTGAAATGCACTGCCAGCAGT
LOC_Os04g52060
Os.20706.1.S1_at--280--1991Chr04:30701540..30701564 (25 bp)
ACTGCCAGCAGTGGTATTTCCCGCT
LOC_Os04g52060
Os.20706.1.S1_at--381--8591Chr04:30701529..30701553 (25 bp)
TGGTATTTCCCGCTGCTACGCTGAC
LOC_Os04g52060
Os.20706.1.S1_at--826--4851Chr04:30701515..30701539 (25 bp)
GCTACGCTGACTCCGATCGATAGTG
LOC_Os04g52060
Target Sequence 
GTGTTGATCATGAGCATGCCCCTGGGTCTTCGGCAGCTGGAGGAGATGTTCAACAGGACCAGTCAAAACATCAGGACGAA
TCAGACAAACAGCATGTTGAAAGGCGTCAATCTGCGAGACACCACGACGACGATGACGACGACGATGACGAAGATTATGA
GGTTGAGGAGGAGGAAGTGGTGTCTACAAGCGATTGATCTGCCTCGCCGCGTAGAATTTTGGCCATGTAATATATAAACC
TGCGTCTAATGNTGTTTCCCTGTCCCTGGTCTTTTGGAGNGATGCTGAAATGCACTGCCAGCAGTGGTATTTCCCGCTGC
TACGCTGACTCCGATCGATAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis