Browse Element(s) Details


OsAffx.14372.2.S1_at

Description tigr:9632.m05036
TID=OsAffx.14372.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=zinc finger domain, LSD1 subclass, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5204011/11zinc finger domain, LSD1 subclass family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52020Os.14486.1.S1_at11/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52020Os.50538.1.S1_at2/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52030OsAffx.26568.1.S1_at11/114+30685461..30688586zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.2.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.2.S1_s_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52050Os.27082.1.S1_at11/114+30695142..30700241expressed protein
LOC_Os04g52060OsAffx.26569.1.S1_x_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060Os.20706.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060OsAffx.26569.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52074Os.23898.1.S1_at11/114+30708554..30715020expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14372.2.S1_at--158--7071Chr04:30692008..30692032 (25 bp)
GTAATGTGTATTACTGTCCCTTTTT
LOC_Os04g52040
OsAffx.14372.2.S1_at--924--6271Chr04:30691979..30692003 (25 bp)
GATGTATTACTGTCCTTTGTTGTTA
LOC_Os04g52040
OsAffx.14372.2.S1_at--528--6791Chr04:30691952..30691976 (25 bp)
GTTATATGTTGCAATATCACCAGTG
LOC_Os04g52040
OsAffx.14372.2.S1_at--528--9671Chr04:30691936..30691960 (25 bp)
TCACCAGTGGACCTGCTGATAAACT
LOC_Os04g52040
OsAffx.14372.2.S1_at--536--2391Chr04:30691916..30691940 (25 bp)
AAACTTCAGTGCTATTACTCCCACT
LOC_Os04g52040
OsAffx.14372.2.S1_at--1014--9311Chr04:30691898..30691922 (25 bp)
TCCCACTTATGATTCCCCAATAGAT
LOC_Os04g52040
OsAffx.14372.2.S1_at--808--10331Chr04:30691771..30691795 (25 bp)
TTTTTAGTTATCCTTGGGCGCCATA
LOC_Os04g52040
OsAffx.14372.2.S1_at--472--8391Chr04:30691755..30691779 (25 bp)
GGCGCCATAATGATCTGTTAACCAC
LOC_Os04g52040
OsAffx.14372.2.S1_at--265--8791Chr04:30691740..30691764 (25 bp)
TGTTAACCACACCTTTTCTATTCAT
LOC_Os04g52040
OsAffx.14372.2.S1_at--1000--9531Chr04:30691724..30691748 (25 bp)
TCTATTCATGACACTGGTACTCCAC
LOC_Os04g52040
OsAffx.14372.2.S1_at--1082--6991Chr04:30691708..30691732 (25 bp)
GTACTCCACTCCAGTCTGTTGTAAG
LOC_Os04g52040
Target Sequence 
GTAATGTGTATTACTGTCCCTTTTTTTTAGATGTATTACTGTCCTTTGTTGTTACTGTTATATGTTGCAATATCACCAGT
GGACCTGCTGATAAACTTCAGTGCTATTACTCCCACTTATGATTCCCCAATAGATTTTTTTTTAAAAAAAATATAGTTGA
ACCATGAAGAACAGGGTAACCAGTTTAACTTTCAAGGGATAATCACCAGTTTATTATCTGAAAGGGTCTTAAACACATTT
TTAGTTATCCTTGGGCGCCATAATGATCTGTTAACCACACCTTTTCTATTCATGACACTGGTACTCCACTCCAGTCTGTT
GTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14372.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis