Browse Element(s) Details


Os.27082.1.S1_at

Description gb:AK060380.1
DB_XREF= gi:32970398
TID=Os.27082.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27082 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013042D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-E01, full insert sequence.
FL= gb:AK065814.1 gb:AK060380.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5205011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52020Os.14486.1.S1_at11/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52020Os.50538.1.S1_at2/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52030OsAffx.26568.1.S1_at11/114+30685461..30688586zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.2.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.2.S1_s_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52050Os.27082.1.S1_at11/114+30695142..30700241expressed protein
LOC_Os04g52060OsAffx.26569.1.S1_x_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060Os.20706.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060OsAffx.26569.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52074Os.23898.1.S1_at11/114+30708554..30715020expressed protein
LOC_Os04g52090OsAffx.14373.1.S1_s_at11/114+30720101..30721198AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27082.1.S1_at--463--7791Chr04:30695715..30695739 (25 bp)
GGTCCAAAATTCACGAAGCGCTCAT
LOC_Os04g52050
Os.27082.1.S1_at--310--6551Chr04:30695688..30695712 (25 bp)
GATTTTGCAGCCATATCTTGACTAC
LOC_Os04g52050
Os.27082.1.S1_at--184--9591Chr04:30695673..30695697 (25 bp)
TCTTGACTACTCTGCACTGTACGAT
LOC_Os04g52050
Os.27082.1.S1_at--781--6291Chr04:30695620..30695644 (25 bp)
GATGATAATCGCACCACAGACAATG
LOC_Os04g52050
Os.27082.1.S1_at--561--6811Chr04:30695532..30695556 (25 bp)
GTTTAGTTGGCCGTTCATGTGTAAT
LOC_Os04g52050
Os.27082.1.S1_at--1099--6531Chr04:30695512..30695536 (25 bp)
GTAATGTTGGCTCTCTAAACCCGGA
LOC_Os04g52050
Os.27082.1.S1_at--387--4351Chr04:30695485..30695509 (25 bp)
CCAGTGCTTGTACTCTTCTGTTTTA
LOC_Os04g52050
Os.27082.1.S1_at--652--7951Chr04:30695445..30695469 (25 bp)
GGATACTCTCTTCTGTTTTGTTTAC
LOC_Os04g52050
Os.27082.1.S1_at--917--5691Chr04:30695417..30695441 (25 bp)
GACTAGAACTACTTCACTTCGCATT
LOC_Os04g52050
Os.27082.1.S1_at--960--10591Chr04:30695284..30695308 (25 bp)
TTCTGCCTTCGAGCTTATAGTTCAT
LOC_Os04g52050
Os.27082.1.S1_at--691--7931Chr04:30695254..30695278 (25 bp)
GGATTCTATATCTACAACTTCTCAG
LOC_Os04g52050
Target Sequence 
GGTCCAAAATTCACGAAGCGCTCATGAGATTTTGCAGCCATATCTTGACTACTCTGCACTGTACGATCCTTCTGCCTCCC
CTAGTCCACGATTTCGATGATAATCGCACCACAGACAATGCCAATATGCATGGTTGATTCCATCTTGATCGTGGAATGGT
GTATGAAACGAAGAGGTTTAGACGTTTAGTTGGCCGTTCATGTGTAATGTTGGCTCTCTAAACCCGGAGCCCAGTGCTTG
TACTCTTCTGTTTTATTGGCTACTGTAACAGGATACTCTCTTCTGTTTTGTTTACACTGACTAGAACTACTTCACTTCGC
ATTTCCCTTCCTGTGAAATGATTTTGGGCGTGTTTAGTGAAGCTTGAGATTCTGAGAAGCAGTTAATTGGTAGCCAGTTT
CTGAGAATATAGAAAAGTTGGGTTTCTCAGCTTCTGCCTTCGAGCTTATAGTTCATTTTCTGGATTCTATATCTACAACT
TCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis