Browse Element(s) Details


Os.18049.1.S1_at

Description gb:CB649549
DB_XREF= gi:29644542
DB_XREF=OSJNEb13I16.r
CLONE=OSJNEb13I16
TID=Os.18049.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.18049 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_178934.1 (A.thaliana) putative TNP1-like transposon protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5204011/11zinc finger domain, LSD1 subclass family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52020Os.14486.1.S1_at11/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52020Os.50538.1.S1_at2/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52030OsAffx.26568.1.S1_at11/114+30685461..30688586zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.2.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.2.S1_s_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52050Os.27082.1.S1_at11/114+30695142..30700241expressed protein
LOC_Os04g52060OsAffx.26569.1.S1_x_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060Os.20706.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060OsAffx.26569.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52074Os.23898.1.S1_at11/114+30708554..30715020expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18049.1.S1_at--840--7551Chr04:30690000..30690024 (25 bp)
GGGCCAAAATGCATCGAGCTCTCGT
LOC_Os04g52040
Os.18049.1.S1_at--64--151Chr04:30689950..30689974 (25 bp)
ATTACTCTGTGCTGTACAACCCTAA
LOC_Os04g52040
Os.18049.1.S1_at--980--2191Chr04:30689913..30689937 (25 bp)
ACAAACTCGATGATTGCCTCACGGG
LOC_Os04g52040
Os.18049.1.S1_at--821--10471Chr04:30689739..30689763 (25 bp)
TTACTCACATCCTAGCATGCTGATC
LOC_Os04g52040
Os.18049.1.S1_at--431--5011Chr04:30689712..30689736 (25 bp)
GCAGGCGTCGCAAGGATCTCAGATA
LOC_Os04g52040
Os.18049.1.S1_at--1022--9051Chr04:30689684..30689708 (25 bp)
TGCATCTGCGTTTTCCATTTAGTTG
LOC_Os04g52040
Os.18049.1.S1_at--1065--7911Chr04:30689660..30689684 (25 bp)
GGTTGGTCACGCATGATAGCAGCTT
LOC_Os04g52040
Os.18049.1.S1_at--714--291Chr04:30689645..30689669 (25 bp)
ATAGCAGCTTTCTTTGGTCCTTCTT
LOC_Os04g52040
Os.18049.1.S1_at--1042--2951Chr04:30689591..30689615 (25 bp)
AATGTGGTTGGTCTTCCACTGTGTT
LOC_Os04g52040
Os.18049.1.S1_at--452--7451Chr04:30689495..30689519 (25 bp)
GTGTCACCGTGTCAGCATCTTCAAA
LOC_Os04g52040
Os.18049.1.S1_at--616--3451Chr04:30689466..30689490 (25 bp)
CAGTCCCTTTTCTTATATCGTAATT
LOC_Os04g52040
Target Sequence 
GGGCCAAAATGCATCGAGCTCTCGTGATGATTTGCAGTCCCCCTATATTGATTACTCTGTGCTGTACAACCCTAACTCTT
CTAGCCAACAAACTCGATGATTGCCTCACGGGTNNNNNTGAACCTGGTTGGTGGATGCTCGAGTACACAGTGGAAGTATT
ACTCACATCCTAGCATGCTGATCGTGCAGGCGTCGCAAGGATCTCAGATATGCTGCATCTGCGTTTTCCATTTAGTTGGT
TGGTCACGCATGATAGCAGCTTTCTTTGGTCCTTCTTTGAGTTGTTAGGAGAGTAATTGGGAGAGTAATGTGGTTGGTCT
TCCACTGTGTTCCATTTCACTTCCAATCTTGCAGATGGCATGTTTGAAATTTGAAAACAACAATATGTGTTCGTGTGTGT
TGGTGTCACCGTGTCAGCATCTTCAAANCANCAGTCCCTTTTCTTATATCGTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis