Browse Element(s) Details


OsAffx.27725.1.S1_at

Description tigr:9634.m01952
TID=OsAffx.27725.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=nucleoid DNA-binding protein cnd41-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2011011/11Eukaryotic aspartyl protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20070OsAffx.4878.1.S1_at11/116+11508924..11509777hypothetical protein
LOC_Os06g20080OsAffx.4153.1.S1_s_at3/116+11511038..11511710hypothetical protein
LOC_Os06g20080Os.12293.1.S1_a_at1/116+11511038..11511710hypothetical protein
LOC_Os06g20090Os.38062.1.S1_at11/116+11514409..11524786non-repetitive/WGA-negative nucleoporin family protein, putative, expressed
LOC_Os06g20090OsAffx.20517.1.S1_at2/116+11514409..11524786non-repetitive/WGA-negative nucleoporin family protein, putative, expressed
LOC_Os06g20100OsAffx.27724.1.S1_at11/116+11527811..11528314hypothetical protein
LOC_Os06g20110OsAffx.27725.1.S1_at11/116+11531552..11532859Eukaryotic aspartyl protease family protein
LOC_Os06g20120OsAffx.15511.1.S1_at11/116+11534324..11536445hypothetical protein
LOC_Os06g20130OsAffx.12985.2.S1_x_at11/116+11544630..11548161hypothetical protein
LOC_Os06g20130OsAffx.12985.2.S1_at11/116+11544630..11548161hypothetical protein
LOC_Os06g20130OsAffx.2233.1.S1_x_at1/116+11544630..11548161hypothetical protein
LOC_Os06g20140OsAffx.4879.1.S1_at11/116+11551915..11555903Eukaryotic aspartyl protease family protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27725.1.S1_at--135--3931Chr06:11532317..11532341 (25 bp)
CGGCCAGAGTACTCCGGCGGCGACA
LOC_Os06g20110
OsAffx.27725.1.S1_at--1021--3211Chr06:11532343..11532367 (25 bp)
CAAGTACGCGCCCATGTCGAGCAAC
LOC_Os06g20110
OsAffx.27725.1.S1_at--807--9411Chr06:11532390..11532414 (25 bp)
TCGTCGACCTCGTCGGGATCAGCGT
LOC_Os06g20110
OsAffx.27725.1.S1_at--995--4691Chr06:11532476..11532500 (25 bp)
GCGGCGACGGAGTTCACCTTCCTCG
LOC_Os06g20110
OsAffx.27725.1.S1_at--84--9171Chr06:11532522..11532546 (25 bp)
TGCGCGACGCGTTCAGGAAGGACAT
LOC_Os06g20110
OsAffx.27725.1.S1_at--951--10531Chr06:11532533..11532557 (25 bp)
TTCAGGAAGGACATGGCACCCTACC
LOC_Os06g20110
OsAffx.27725.1.S1_at--531--9331Chr06:11532633..11532657 (25 bp)
TCGCGCTCAGGTTCGCCGGAGGAAC
LOC_Os06g20110
OsAffx.27725.1.S1_at--391--1311Chr06:11532681..11532705 (25 bp)
AGATGATGTACTTCGCGGATCCGTC
LOC_Os06g20110
OsAffx.27725.1.S1_at--148--4691Chr06:11532695..11532719 (25 bp)
GCGGATCCGTCGAGCGTGTTCTCCT
LOC_Os06g20110
OsAffx.27725.1.S1_at--936--4931Chr06:11532758..11532782 (25 bp)
GCATTCCCGGTGTCGGTCATCGGAA
LOC_Os06g20110
OsAffx.27725.1.S1_at--125--5451Chr06:11532780..11532804 (25 bp)
GAACCCTGGCGCAGCGATCGACGGA
LOC_Os06g20110
Target Sequence 
CGGCCAGAGTACTCCGGCGGCGACATCAAGTACGCGCCCATGTCGAGCAACCCCAACCACCCAAACTCCTACTTCGTCGA
CCTCGTCGGGATCAGCGTCGGCGGCGAGGACCTCCCCGTCCCGCCCGCCGTGTTCGCCGCCCACGGCACGCTGCTGGAGG
CGGCGACGGAGTTCACCTTCCTCGCCCCGGCGGCCTACGCGGCGCTGCGCGACGCGTTCAGGAAGGACATGGCACCCTAC
CCGGCGGCGCCGCCGTTCCGCGTGCTCGACACGTGCTACAACCTCACCGGGCTAGCCAGCCTCGCCGTGCCGGCCGTCGC
GCTCAGGTTCGCCGGAGGAACGGAGCTGGAGCTCGACGTGCGGCAGATGATGTACTTCGCGGATCCGTCGAGCGTGTTCT
CCTCCGTCGCGTGCCTCGCGTTCGCCGCCGCGCCGCTCCCGGCATTCCCGGTGTCGGTCATCGGAACCCTGGCGCAGCGA
TCGACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis