Browse Element(s) Details


OsAffx.27724.1.S1_at

Description tigr:9634.m01951
TID=OsAffx.27724.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2010011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20050NANA6+11497993..11502824NB-ARC domain containing protein
LOC_Os06g20060OsAffx.15510.1.S1_at11/116+11503386..11506370expressed protein
LOC_Os06g20070OsAffx.4878.1.S1_at11/116+11508924..11509777hypothetical protein
LOC_Os06g20080OsAffx.4153.1.S1_s_at3/116+11511038..11511710hypothetical protein
LOC_Os06g20080Os.12293.1.S1_a_at1/116+11511038..11511710hypothetical protein
LOC_Os06g20090Os.38062.1.S1_at11/116+11514409..11524786non-repetitive/WGA-negative nucleoporin family protein, putative, expressed
LOC_Os06g20090OsAffx.20517.1.S1_at2/116+11514409..11524786non-repetitive/WGA-negative nucleoporin family protein, putative, expressed
LOC_Os06g20100OsAffx.27724.1.S1_at11/116+11527811..11528314hypothetical protein
LOC_Os06g20110OsAffx.27725.1.S1_at11/116+11531552..11532859Eukaryotic aspartyl protease family protein
LOC_Os06g20120OsAffx.15511.1.S1_at11/116+11534324..11536445hypothetical protein
LOC_Os06g20130OsAffx.12985.2.S1_x_at11/116+11544630..11548161hypothetical protein
LOC_Os06g20130OsAffx.12985.2.S1_at11/116+11544630..11548161hypothetical protein
LOC_Os06g20130OsAffx.2233.1.S1_x_at1/116+11544630..11548161hypothetical protein
LOC_Os06g20140OsAffx.4879.1.S1_at11/116+11551915..11555903Eukaryotic aspartyl protease family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27724.1.S1_at--278--10291Chr06:11527843..11527867 (25 bp)
TTTCGCCCTGGGAGATCTGACCCAG
LOC_Os06g20100
OsAffx.27724.1.S1_at--1129--4391Chr06:11527867..11527891 (25 bp)
GCCAGAGTACGCTCCTCGACTAGAT
LOC_Os06g20100
OsAffx.27724.1.S1_at--246--5711Chr06:11527884..11527908 (25 bp)
GACTAGATCAGAATCATCGTCGCCA
LOC_Os06g20100
OsAffx.27724.1.S1_at--112--10051Chr06:11527887..11527911 (25 bp)
TAGATCAGAATCATCGTCGCCAACA
LOC_Os06g20100
OsAffx.27724.1.S1_at--1008--1391Chr06:11527942..11527966 (25 bp)
AGACAATTGGCGTACCAGAAGATTT
LOC_Os06g20100
OsAffx.27724.1.S1_at--354--3311Chr06:11528196..11528220 (25 bp)
CACTTCGTCGCATTTTCCGTTGGAA
LOC_Os06g20100
OsAffx.27724.1.S1_at--793--9271Chr06:11528203..11528227 (25 bp)
TCGCATTTTCCGTTGGAACCCTAGA
LOC_Os06g20100
OsAffx.27724.1.S1_at--287--10351Chr06:11528208..11528232 (25 bp)
TTTTCCGTTGGAACCCTAGACATGG
LOC_Os06g20100
OsAffx.27724.1.S1_at--864--4851Chr06:11528217..11528241 (25 bp)
GGAACCCTAGACATGGGACCCACGT
LOC_Os06g20100
OsAffx.27724.1.S1_at--7--1411Chr06:11528225..11528249 (25 bp)
AGACATGGGACCCACGTGTTAGTCC
LOC_Os06g20100
OsAffx.27724.1.S1_at--613--1911Chr06:11528238..11528262 (25 bp)
ACGTGTTAGTCCCATCTTCCTTCAT
LOC_Os06g20100
Target Sequence 
TTTCGCCCTGGGAGATCTGACCCAGCCAGAGTACGCTCCTCGACTAGATCAGAATCATCGTCGCCAACAATTTGATCTAT
TGAGATCATCCAAGGTTCAAGACAATTGGCGTACCAGAAGATTTCAAATATATATGATGTTGAACAAGTACGCAACAAGG
CTACGTGCCACTGGAATTTGGGAAATTGGAACCATGCCACTTCGTCGCATTTTCCGTTGGAACCCTAGACATGGGACCCA
CGTGTTAGTCCCATCTTCCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis