Browse Element(s) Details


OsAffx.12985.2.S1_x_at

Description tigr:9634.m01954
TID=OsAffx.12985.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gene_id:K18I23.27
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2013011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20090Os.38062.1.S1_at11/116+11514409..11524786non-repetitive/WGA-negative nucleoporin family protein, putative, expressed
LOC_Os06g20090OsAffx.20517.1.S1_at2/116+11514409..11524786non-repetitive/WGA-negative nucleoporin family protein, putative, expressed
LOC_Os06g20100OsAffx.27724.1.S1_at11/116+11527811..11528314hypothetical protein
LOC_Os06g20110OsAffx.27725.1.S1_at11/116+11531552..11532859Eukaryotic aspartyl protease family protein
LOC_Os06g20120OsAffx.15511.1.S1_at11/116+11534324..11536445hypothetical protein
LOC_Os06g20130OsAffx.12985.2.S1_x_at11/116+11544630..11548161hypothetical protein
LOC_Os06g20130OsAffx.12985.2.S1_at11/116+11544630..11548161hypothetical protein
LOC_Os06g20130OsAffx.2233.1.S1_x_at1/116+11544630..11548161hypothetical protein
LOC_Os06g20140OsAffx.4879.1.S1_at11/116+11551915..11555903Eukaryotic aspartyl protease family protein
LOC_Os06g20150Os.27789.1.A1_at11/116+11558586..11559930Peroxidase 1 precursor, putative, expressed
LOC_Os06g20160Os.28943.1.S1_x_at5/116+11562590..11565813retrotransposon protein, putative, unclassified
LOC_Os06g20170NANA6+11566715..11572406retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12985.2.S1_x_at--79--9854Chr12:10871590..10871611 (22 bp)
TACACCCAAGGTCCTTCAACTTGTT
NONE
OsAffx.12985.2.S1_x_at--1058--9897Chr11:19986889..19986909 (21 bp)
TATCGTCCTCGAACCGCAAAACTGG
NONE
OsAffx.12985.2.S1_x_at--361--3274Chr08:21640841..21641191 (25 bp)
CAAAACTGGTTTTATCCTATGTGGC
NONE
OsAffx.12985.2.S1_x_at--594--9253Chr03:11440082..11440514 (25 bp)
TCCTATGTGGCAGCTGACTTAGCGT
NONE
OsAffx.12985.2.S1_x_at--607--9414Chr06:11544046..11544070 (25 bp)
TCGTCGGCTCGCTCAGCCGGAGTGC
NONE
OsAffx.12985.2.S1_x_at--161--3391Chr06:11544753..11544777 (25 bp)
CAGCGACATCGTCTCTCACATGGTG
LOC_Os06g20130
OsAffx.12985.2.S1_x_at--86--7171Chr06:11544743..11544767 (25 bp)
GTCTCTCACATGGTGATGGGCCGGC
LOC_Os06g20130
OsAffx.12985.2.S1_x_at--661--3971Chr06:11544719..11544743 (25 bp)
CGGTGGACCGGCGATGACAATGACA
LOC_Os06g20130
OsAffx.12985.2.S1_x_at--81--8111Chr06:11544715..11544739 (25 bp)
GGACCGGCGATGACAATGACACGAA
LOC_Os06g20130
OsAffx.12985.2.S1_x_at--649--3191Chr06:11544702..11544726 (25 bp)
CAATGACACGAAGGAGATGCGGAGC
LOC_Os06g20130
OsAffx.12985.2.S1_x_at--1132--8071Chr06:11544660..11544684 (25 bp)
GGAGCTCACCAGCACGTTCAACTTA
LOC_Os06g20130
Target Sequence 
TACACCCAAGGTCCTTCAACTTGTTATCGAGTTACAATATCGTCCTCGAACCGCAAAACTGGTTTTATCCTATGTGGCAG
CTGACTTAGCGTGGGACCCACGTGGGCCCCCACGCGTCAGCCTCTTTTTCCCTCCCCTCTCCACCTCTTCCTCTCCAATC
TCCACGGGCGGCGCGCGGGGAGCAGCTGCACAGGCAGCGGTCGGCAGGCGCAGGCGGCGTGGGGAGGAGCCGCGCGCGGG
CGGCAGGCGGCGAGCGGCGGAGGCTGGGCGGGCGGGCGACGGCCAGCGGGGGAGGAGCTGGGCGGCGGTGCACGAGCTCC
TCGCCGGACGAACGCTAGACCGGCTCCGCCACGTCCGCCGCGAGGAGGTGGCGCGCCTCGTCGGCTCGCTCAGCCGGAGT
GCCGCCGACGGCGAGCACGTCGACGTCGACGCCGCGCTGATGGGCCTCACCAGCGACATCGTCTCTCACATGGTGATGGG
CCGGCGGTGGACCGGCGATGACAATGACACGAAGGAGATGCGGAGCGTGGTCGCCGAGACGGCGGAGCTCACCAGCACGT
TCAACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12985.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis