Browse Element(s) Details


Os.16597.1.S1_s_at

Description gb:AK121898.1
DB_XREF= gi:37991521
TID=Os.16597.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) transcription factor-like protein (OJ1003_C06.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105F09, full insert sequence.
FL= gb:AK121898.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4495011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44870OsAffx.28907.1.S1_at10/117+26783302..26784429hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_x_at9/117+26785165..26785458hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_at8/117+26785165..26785458hypothetical protein
LOC_Os07g44890Os.28558.1.S1_at11/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44890OsAffx.28906.1.S1_x_at1/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44900Os.22197.1.S1_at1/117+26791757..26792797serine hydrolase, putative, expressed
LOC_Os07g44910Os.29933.1.S1_at11/117+26794498..26795817PrMC3, putative, expressed
LOC_Os07g44920Os.43269.1.S1_x_at3/117+26800833..26801431Dirigent-like protein
LOC_Os07g44930Os.43269.1.S1_x_at1/117+26803569..26804441Dirigent-like protein, expressed
LOC_Os07g44940Os.36008.2.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.2.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.1.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_at10/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44950Os.16597.1.S1_s_at11/117+26808105..26811557bZIP transcription factor family protein, expressed
LOC_Os07g44960Os.8486.1.S2_s_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44960Os.8486.1.S1_a_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44960Os.8486.1.S1_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44970OsAffx.30782.1.S1_s_at11/117+26817670..26822563transcription-coupled DNA repair protein, putative, expressed
LOC_Os07g44970Os.33176.1.S1_at11/117+26817670..26822563transcription-coupled DNA repair protein, putative, expressed
LOC_Os07g44980Os.38395.3.S1_x_at3/117+26829351..26832167hypothetical protein
LOC_Os07g44980Os.38395.5.S1_at2/117+26829351..26832167hypothetical protein
LOC_Os07g44980Os.38395.2.S1_x_at2/117+26829351..26832167hypothetical protein
LOC_Os07g44990Os.2987.3.S1_x_at2/117+26836213..26838611retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16597.1.S1_s_at--403--5471Chr07:26810962..26810986 (25 bp)
GAACTCCGGGATGTGCACTGAAGTA
LOC_Os07g44950
Os.16597.1.S1_s_at--804--5131Chr07:26811020..26811044 (25 bp)
GCAAATGGCATTGTGCCTGTCTACT
LOC_Os07g44950
Os.16597.1.S1_s_at--702--4271Chr07:26811035..26811059 (25 bp)
CCTGTCTACTCTGGGTCAGTGACTA
LOC_Os07g44950
Os.16597.1.S1_s_at--519--311Chr07:26811075..26811099 (25 bp)
ATACTGAAAATCTTCCTTCTGGCCC
LOC_Os07g44950
Os.16597.1.S1_s_at--385--5311Chr07:26811120..26811144 (25 bp)
GAAGGATTTCGTACTCAGAAGCCAT
LOC_Os07g44950
Os.16597.1.S1_s_at--119--5431Chr07:26811137..26811161 (25 bp)
GAAGCCATCCCTTTACGAGGTTCGA
LOC_Os07g44950
Os.16597.1.S1_s_at--521--5631Chr07:26811170..26811194 (25 bp)
GACACGGATCATTTCAAAGCACCCC
LOC_Os07g44950
Os.16597.1.S1_s_at--840--7111Chr07:26811207..26811231 (25 bp)
GTCAGAGCCATGCTGGTCGTAAGCC
LOC_Os07g44950
Os.16597.1.S1_s_at--100--9811Chr07:26811226..26811250 (25 bp)
TAAGCCAGTTTCGTCCGTTGTAGTC
LOC_Os07g44950
Os.16597.1.S1_s_at--116--8031Chr07:26811297..26811321 (25 bp)
GGAGGATCTCCTCAAATTCTCTGTC
LOC_Os07g44950
Os.16597.1.S1_s_at--956--4951Chr07:26811324..26811348 (25 bp)
GCATCTTCGTTGTCGTTCTTATAGA
LOC_Os07g44950
Target Sequence 
GAACTCCGGGATGTGCACTGAAGTATTCCAATTTGATTTATCTCCAACNACAGCTGATGCAAATGGCATTGTGCCTGTCT
ACTCTGGGTCAGTGACTAACACGTCACAAAATTATACTGAAAATCTTCCTTCTGGCCCTGTTCAGAAGGTGAAGAACAGA
AGGATTTCGTACTCAGAAGCCATCCCTTTACGAGGTTCGANATCCAATGACACGGATCATTTCAAAGCACCCCCCAAGAA
CCATAGTCAGAGCCATGCTGGTCGTAAGCCAGTTTCGTCCGTTGTAGTCTCTGTCCTGGCTGATCCAAGGGAAGNGAGNG
ATAGGGATGGTGAGGGGAGGATCTCCTCAAATTCTCTGTCCCGCATCTTCGTTGTCGTTCTTATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16597.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis