Browse Element(s) Details


Os.36008.3.S1_at

Description gb:NM_188848.1
DB_XREF= gi:34904779
GEN=OJ1003_C06.32
TID=Os.36008.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1003_C06.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1003_C06.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4494010/11ATP12 ATPase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44860Os.30311.1.S1_at11/117+26781185..26782868alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g44870OsAffx.28907.1.S1_at10/117+26783302..26784429hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_x_at9/117+26785165..26785458hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_at8/117+26785165..26785458hypothetical protein
LOC_Os07g44890Os.28558.1.S1_at11/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44890OsAffx.28906.1.S1_x_at1/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44900Os.22197.1.S1_at1/117+26791757..26792797serine hydrolase, putative, expressed
LOC_Os07g44910Os.29933.1.S1_at11/117+26794498..26795817PrMC3, putative, expressed
LOC_Os07g44920Os.43269.1.S1_x_at3/117+26800833..26801431Dirigent-like protein
LOC_Os07g44930Os.43269.1.S1_x_at1/117+26803569..26804441Dirigent-like protein, expressed
LOC_Os07g44940Os.36008.2.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.2.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.1.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_at10/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44950Os.16597.1.S1_s_at11/117+26808105..26811557bZIP transcription factor family protein, expressed
LOC_Os07g44960Os.8486.1.S2_s_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44960Os.8486.1.S1_a_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44960Os.8486.1.S1_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44970OsAffx.30782.1.S1_s_at11/117+26817670..26822563transcription-coupled DNA repair protein, putative, expressed
LOC_Os07g44970Os.33176.1.S1_at11/117+26817670..26822563transcription-coupled DNA repair protein, putative, expressed
LOC_Os07g44980Os.38395.3.S1_x_at3/117+26829351..26832167hypothetical protein
LOC_Os07g44980Os.38395.5.S1_at2/117+26829351..26832167hypothetical protein
LOC_Os07g44980Os.38395.2.S1_x_at2/117+26829351..26832167hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36008.3.S1_at--249--7051Chr07:26805354..26805378 (25 bp)
GTAAACACTGAGTTTGGCTTCAAGC
LOC_Os07g44940
Os.36008.3.S1_at--786--8491Chr07:26805340..26805364 (25 bp)
TGGCTTCAAGCCTGTTGTATACACA
LOC_Os07g44940
Os.36008.3.S1_at--1130--8291Chr07:26805339..26805363 (25 bp)
GGCTTCAAGCCTGTTGTATACACAA
LOC_Os07g44940
Os.36008.3.S1_at--102--4911Chr07:26805338..26805362 (25 bp)
GCTTCAAGCCTGTTGTATACACAAG
LOC_Os07g44940
Os.36008.3.S1_at--782--3651Chr07:26805337..26805361 (25 bp)
CTTCAAGCCTGTTGTATACACAAGC
LOC_Os07g44940
Os.36008.3.S1_at--781--10511Chr07:26805336..26805360 (25 bp)
TTCAAGCCTGTTGTATACACAAGCT
LOC_Os07g44940
Os.36008.3.S1_at--995--9711Chr07:26805335..26805359 (25 bp)
TCAAGCCTGTTGTATACACAAGCTT
LOC_Os07g44940
Os.36008.3.S1_at--426--3251Chr07:26805334..26805358 (25 bp)
CAAGCCTGTTGTATACACAAGCTTT
LOC_Os07g44940
Os.36008.3.S1_at--181--1671Chr07:26805051..26805232 (25 bp)
AGCCCATTCCCTGGTTGATAGATGG
LOC_Os07g44940
Os.36008.3.S1_at--64--4551Chr07:26805050..26805231 (25 bp)
GCCCATTCCCTGGTTGATAGATGGG
LOC_Os07g44940
Target Sequence 
GTAAACACTGAGTTTGGCTTCAAGCCTGTTGTATACACAAGCTTTTTTGGTGGAAAGCAAGATGAAGGGTTAGCTAATGC
TGTAGAAACTGTTTTGAAGAATACCACCGACTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCATTCCCTGG
TTGATAGATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36008.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis