Browse Element(s) Details


Os.8486.1.S2_s_at

Description gb:AU096412
DB_XREF= gi:8859094
DB_XREF=AU096412
CLONE=S13660
TID=Os.8486.1
CNT=7
FEA=FLmRNA
TIER=ConsEnd
STK=2
UG=Os.8486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU096411(S13660),AU096412(S13660)~similar to Arabidopsis thaliana chromosome3,At3g50620~unknown protein (OJ1003_C06.35), mRNA
FL= gb:AK062884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4496011/11nodulation protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44890Os.28558.1.S1_at11/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44890OsAffx.28906.1.S1_x_at1/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44900Os.22197.1.S1_at1/117+26791757..26792797serine hydrolase, putative, expressed
LOC_Os07g44910Os.29933.1.S1_at11/117+26794498..26795817PrMC3, putative, expressed
LOC_Os07g44920Os.43269.1.S1_x_at3/117+26800833..26801431Dirigent-like protein
LOC_Os07g44930Os.43269.1.S1_x_at1/117+26803569..26804441Dirigent-like protein, expressed
LOC_Os07g44940Os.36008.2.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.2.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.1.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_at10/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44950Os.16597.1.S1_s_at11/117+26808105..26811557bZIP transcription factor family protein, expressed
LOC_Os07g44960Os.8486.1.S2_s_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44960Os.8486.1.S1_a_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44960Os.8486.1.S1_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44970OsAffx.30782.1.S1_s_at11/117+26817670..26822563transcription-coupled DNA repair protein, putative, expressed
LOC_Os07g44970Os.33176.1.S1_at11/117+26817670..26822563transcription-coupled DNA repair protein, putative, expressed
LOC_Os07g44980Os.38395.3.S1_x_at3/117+26829351..26832167hypothetical protein
LOC_Os07g44980Os.38395.5.S1_at2/117+26829351..26832167hypothetical protein
LOC_Os07g44980Os.38395.2.S1_x_at2/117+26829351..26832167hypothetical protein
LOC_Os07g44990Os.2987.3.S1_x_at2/117+26836213..26838611retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8486.1.S2_s_at--908--9871Chr07:26816897..26816921 (25 bp)
TACATCAGAGATTGCTTGGACCACT
LOC_Os07g44960
Os.8486.1.S2_s_at--797--6051Chr07:26816904..26816928 (25 bp)
GAGATTGCTTGGACCACTTCAACAC
LOC_Os07g44960
Os.8486.1.S2_s_at--587--2051Chr07:26816919..26816943 (25 bp)
ACTTCAACACCACACGGCACATGAT
LOC_Os07g44960
Os.8486.1.S2_s_at--710--1931Chr07:26816932..26816956 (25 bp)
ACGGCACATGATCCTCTACTACGAG
LOC_Os07g44960
Os.8486.1.S2_s_at--939--9891Chr07:26816948..26816972 (25 bp)
TACTACGAGGATATTGTCCGCAACA
LOC_Os07g44960
Os.8486.1.S2_s_at--374--2131Chr07:26816970..26817075 (25 bp)
ACAGAAATGCATTGTTCCAGGTACA
LOC_Os07g44960
Os.8486.1.S2_s_at--1068--1611Chr07:26817102..26817126 (25 bp)
AGCTGGTCAGCAGGCAGGTGAAAAT
LOC_Os07g44960
Os.8486.1.S2_s_at--798--8971Chr07:26817120..26817144 (25 bp)
TGAAAATTCACACTAGTCCTCTTCC
LOC_Os07g44960
Os.8486.1.S2_s_at--1127--8891Chr07:26817171..26817195 (25 bp)
TGAGCAACAAACTGAATGGGACACA
LOC_Os07g44960
Os.8486.1.S2_s_at--184--811Chr07:26817186..26817210 (25 bp)
ATGGGACACAGTATGCTCATTTTCT
LOC_Os07g44960
Os.8486.1.S2_s_at--978--3751Chr07:26817201..26817225 (25 bp)
CTCATTTTCTTGACGGTGCAGATTA
LOC_Os07g44960
Target Sequence 
TACATCAGAGATTGCTTGGACCACTTCAACACCACACGGCACATGATCCTCTACTACGAGGATATTGTCCGCAACAGAAA
TGCATTGTTCCAGGTACAAGAATTCCTCGGNGTTCCGGTGAGAAAGCTGGTCAGCAGGCAGGTGAAAATTCACACTAGTC
CTCTTCCAGGCCTTGTCAGNAACTGGGATGATGTGAGCAACAAACTGAATGGGACACAGTATGCTCATTTTCTTGACGGT
GCAGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8486.1.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis