Browse Element(s) Details


Os.37200.1.S1_at

Description gb:AK060158.1
DB_XREF= gi:32970176
TID=Os.37200.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transcription factor APFI (OJ1003_C06.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-G03, full insert sequence.
FL= gb:AK060158.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4484011/11Protein yrdA, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44820Os.10976.1.A1_at11/117+26752941..26755838expressed protein
LOC_Os07g44820Os.10976.1.A1_x_at11/117+26752941..26755838expressed protein
LOC_Os07g44830Os.33874.2.A1_x_at9/117+26766682..26772424proline-rich family protein, putative, expressed
LOC_Os07g44840Os.37200.1.S1_at11/117+26773715..26776982Protein yrdA, putative, expressed
LOC_Os07g44850OsAffx.28906.1.S1_x_at11/117+26778412..26779437PrMC3, putative, expressed
LOC_Os07g44860Os.30311.1.S1_at11/117+26781185..26782868alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g44870OsAffx.28907.1.S1_at10/117+26783302..26784429hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_x_at9/117+26785165..26785458hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_at8/117+26785165..26785458hypothetical protein
LOC_Os07g44890Os.28558.1.S1_at11/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44890OsAffx.28906.1.S1_x_at1/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44900Os.22197.1.S1_at1/117+26791757..26792797serine hydrolase, putative, expressed
LOC_Os07g44910Os.29933.1.S1_at11/117+26794498..26795817PrMC3, putative, expressed
LOC_Os07g44920Os.43269.1.S1_x_at3/117+26800833..26801431Dirigent-like protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37200.1.S1_at--895--7771Chr07:26774739..26774763 (25 bp)
GGTGCAGGATCCCTTGTAAAGCAAA
LOC_Os07g44840
Os.37200.1.S1_at--539--2331Chr07:26774722..26774746 (25 bp)
AAAGCAAAACACCAGGATTCCTTCT
LOC_Os07g44840
Os.37200.1.S1_at--905--8371Chr07:26774173..26774197 (25 bp)
GGCGTTCATTGCACAGTCAGCAACA
LOC_Os07g44840
Os.37200.1.S1_at--892--10151Chr07:26774143..26774167 (25 bp)
TATCAATTTGGCTCAAGTCCACGCA
LOC_Os07g44840
Os.37200.1.S1_at--352--1351Chr07:26774002..26774026 (25 bp)
AGAGCTTATCCTCCCGGACAGTATC
LOC_Os07g44840
Os.37200.1.S1_at--335--2691Chr07:26773958..26773982 (25 bp)
AAGCTGTTGCTCACTGAGTGTTTTC
LOC_Os07g44840
Os.37200.1.S1_at--511--6111Chr07:26773943..26773967 (25 bp)
GAGTGTTTTCTTAAAGCTCCCGCTT
LOC_Os07g44840
Os.37200.1.S1_at--497--4191Chr07:26773925..26773949 (25 bp)
CCCGCTTGGGAAGCTTTGCTGTTAT
LOC_Os07g44840
Os.37200.1.S1_at--253--3451Chr07:26773879..26773903 (25 bp)
CAGTTTTGTCTGTCCGTAGAGGAAA
LOC_Os07g44840
Os.37200.1.S1_at--878--931Chr07:26773854..26773878 (25 bp)
AGGAAGTCAATTGGTTCCCCTGCTT
LOC_Os07g44840
Os.37200.1.S1_at--767--6151Chr07:26773734..26773758 (25 bp)
GAGGATTTTCGTGGGTGCAGAACTA
LOC_Os07g44840
Target Sequence 
GGTGCAGGATCCCTTGTAAAGCAAAACACCAGGATTCCTTCTGGAGAGGTCTGGGTTGGTAATCCTGCCAAGTTCCTAAG
AAAGCTTACTGAAGAGGAGATGGCGTTCATTGCACAGTCAGCAACAAACTATATCAATTTGGCTCAAGTCCACGCANCCG
AGAATGCCNAGACCTTCGATGAGATTGAGCTCGAGAAGATGCTGAGGAAGAAGTTTGCGCACAAAGACGAGGAGTACGAT
TCGATGCTCGGCGTGGTCCGTGAGATCCCACCAGAGCTTATCCTCCCGGACAGTATCCTCCCAAACAAGGCTCAAAAAGC
TGTTGCTCACTGAGTGTTTTCTTAAAGCTCCCGCTTGGGAAGCTTTGCTGTTATTACATGTTGACTTGTTTATGACAGTT
TTGTCTGTCCGTAGAGGAAAAGGAAGTCAATTGGTTCCCCTGCTTTTGACTTGCTTGCTTGATAGATGTGAAGTTCAAGT
TATTTGATACTAAATAGCTGTAGTGTGAAAAAGTCAGTGAGCTCAGAAAGTAGAAATTTTGAGGATTTTCGTGGGTGCAG
AACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis