Browse Element(s) Details


Os.33874.2.A1_x_at

Description gb:BX900611
DB_XREF= gi:40493123
DB_XREF=BX900611
CLONE=y727h05p3
TID=Os.33874.2
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 2,At2g26770 (OJ1003_C06.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g448309/11proline-rich family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44820Os.10976.1.A1_at11/117+26752941..26755838expressed protein
LOC_Os07g44820Os.10976.1.A1_x_at11/117+26752941..26755838expressed protein
LOC_Os07g44830Os.33874.2.A1_x_at9/117+26766682..26772424proline-rich family protein, putative, expressed
LOC_Os07g44840Os.37200.1.S1_at11/117+26773715..26776982Protein yrdA, putative, expressed
LOC_Os07g44850OsAffx.28906.1.S1_x_at11/117+26778412..26779437PrMC3, putative, expressed
LOC_Os07g44860Os.30311.1.S1_at11/117+26781185..26782868alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g44870OsAffx.28907.1.S1_at10/117+26783302..26784429hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_x_at9/117+26785165..26785458hypothetical protein
LOC_Os07g44880OsAffx.16714.1.S1_at8/117+26785165..26785458hypothetical protein
LOC_Os07g44890Os.28558.1.S1_at11/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44890OsAffx.28906.1.S1_x_at1/117+26789175..26790345serine hydrolase, putative, expressed
LOC_Os07g44900Os.22197.1.S1_at1/117+26791757..26792797serine hydrolase, putative, expressed
LOC_Os07g44910Os.29933.1.S1_at11/117+26794498..26795817PrMC3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33874.2.A1_x_at--646--1471Chr07:26771590..26771614 (25 bp)
AGAATTCTACTCCTCAACGATGCAG
LOC_Os07g44830
Os.33874.2.A1_x_at--144--2631Chr07:26771802..26771826 (25 bp)
AACCGAGGAGAGACCTGAGCCTGGT
LOC_Os07g44830
Os.33874.2.A1_x_at--343--1391Chr07:26772101..26772125 (25 bp)
AGACGAACTGTACCAGCTAACCTCT
LOC_Os07g44830
Os.33874.2.A1_x_at--1047--4831Chr07:26772116..26772140 (25 bp)
GCTAACCTCTTGTACGAGCTCAGAC
LOC_Os07g44830
Os.33874.2.A1_x_at--1084--4811Chr07:26772133..26772157 (25 bp)
GCTCAGACCCTGTGTTTGGAATCAT
LOC_Os07g44830
Os.33874.2.A1_x_at--140--6831Chr07:26772231..26772255 (25 bp)
GTTTAGTAGTAGTAGGTTCGCCAAG
LOC_Os07g44830
Os.33874.2.A1_x_at--374--6711Chr07:26772246..26772270 (25 bp)
GTTCGCCAAGGCATCGTTTTTACTG
LOC_Os07g44830
Os.33874.2.A1_x_at--1112--471Chr07:26772258..26772282 (25 bp)
ATCGTTTTTACTGCCTTGCGGGTCA
LOC_Os07g44830
Os.33874.2.A1_x_at--176--4311Chr07:26772271..26772295 (25 bp)
CCTTGCGGGTCAGTCTAGTTTAGTT
LOC_Os07g44830
Os.33874.2.A1_x_at--214--8891NONE
TGAGAGAGAGACACCCACGCACGTT
NONE
Os.33874.2.A1_x_at--295--1891NONE
ACGTTGTAGCTGTGTCAGCACTCCA
NONE
Target Sequence 
AGAATTCTACTCCTCAACGATGCAGCTATGTGGTATGAGAGGCGGTGGAGANGCTGCACCCCAANCNATGTACTGGCAAC
CGAGGAGAGACCTGAGCCTGGTNCTGGNCTTCGAGACGNCCAGAGAACGCAACTCNGCAATCATGCTCGCTCGCAGATTN
GCCATCGATNGCAATATCATACTTGCTGNTCCTGGGGATAAAACTCACTGGTGATTGATGAAGACGAACTGTACCAGCTA
ACCTCTTGTACGAGCTCAGACCCTGTGTTTGGAATCATTGTACATTTGTGTCGTTGTAGTTAGATACTCTAANACATANC
TGATCTGTGAGGTGTATTGTAGTGAGGGNTAGTTTAGTAGTAGTAGGTTCGCCAAGGCATCGTTTTTACTGCCTTGCGGG
TCAGTCTAGTTTAGTTGGTAAATTATGAGTATTTCTCATTTCTGAGAGAGAGACACCCACGCACGTTGTAGCTGTGTCAG
CACTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33874.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis