Browse Element(s) Details


Os.37457.1.S1_at

Description gb:AK058442.1
DB_XREF= gi:32968460
TID=Os.37457.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37457 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) lipase-like protein~predicted by FGENESH etc. (OJ1003_C06.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-G02, full insert sequence.
FL= gb:AK058442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4478011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44730OsAffx.28905.1.S1_at10/117+26701807..26703488hypothetical protein
LOC_Os07g44740Os.12190.1.S1_at11/117+26704204..2670619110 kDa chaperonin, putative, expressed
LOC_Os07g44750NANA7+26711365..26712034hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_x_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_s_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.1.S1_at10/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_at9/117+26713800..26715490hypothetical protein
LOC_Os07g44760Os.52115.1.S1_at1/117+26713800..26715490hypothetical protein
LOC_Os07g44770Os.53868.1.S1_s_at11/117+26717278..26719827expressed protein
LOC_Os07g44770Os.53868.1.S1_at10/117+26717278..26719827expressed protein
LOC_Os07g44780Os.37457.1.S1_at11/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.46863.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.20309.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44790Os.3933.1.S1_a_at11/117+26729333..26731587Trafficking protein particle complex subunit 3, putative, expressed
LOC_Os07g44800Os.45950.1.A1_at11/117+26732964..26736557SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 1, putative, expressed
LOC_Os07g44810NANA7+26739375..26739920transposon protein, putative, unclassified
LOC_Os07g44820Os.10976.1.A1_at11/117+26752941..26755838expressed protein
LOC_Os07g44820Os.10976.1.A1_x_at11/117+26752941..26755838expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37457.1.S1_at--1101--2011Chr07:26726263..26726287 (25 bp)
ACTACTACGGCGAGGTGATGGAGCT
LOC_Os07g44780
Os.37457.1.S1_at--1038--5891Chr07:26726243..26726267 (25 bp)
GAGCTCGTGTCGAACCCCGCGGCGA
LOC_Os07g44780
Os.37457.1.S1_at--357--8351Chr07:26726180..26726204 (25 bp)
GGCGGGCCGTACAACGGCAACTTCA
LOC_Os07g44780
Os.37457.1.S1_at--461--2571Chr07:26726168..26726192 (25 bp)
AACGGCAACTTCACCGTGCACTGCT
LOC_Os07g44780
Os.37457.1.S1_at--655--4971Chr07:26726104..26726128 (25 bp)
GCATCTCGTGGGACGGCCTGCACAT
LOC_Os07g44780
Os.37457.1.S1_at--9--8371Chr07:26726073..26726097 (25 bp)
GGCGGTGTACCGGATCATGGCGCGC
LOC_Os07g44780
Os.37457.1.S1_at--710--411Chr07:26726015..26726039 (25 bp)
ATCATGTCCAGATGCCACGGCTACT
LOC_Os07g44780
Os.37457.1.S1_at--673--3431Chr07:26726007..26726031 (25 bp)
CAGATGCCACGGCTACTAGCCTACT
LOC_Os07g44780
Os.37457.1.S1_at--831--4851Chr07:26725981..26726005 (25 bp)
GCTAGCTTAAGCCAGTTTGGGATTT
LOC_Os07g44780
Os.37457.1.S1_at--182--10491Chr07:26725975..26725999 (25 bp)
TTAAGCCAGTTTGGGATTTGCTCAT
LOC_Os07g44780
Os.37457.1.S1_at--1044--4811Chr07:26725956..26725980 (25 bp)
GCTCATTTGTTAATTTGCACGGACA
LOC_Os07g44780
Target Sequence 
ACTACTACGGCGAGGTGATGGAGCTCGTGTCGAACCCCGCGGCGAGCGGGTTCGACGACGCCCTGACCGCGTGCTGCGCC
GGCGGCGGGCCGTACAACGGCAACTTCACCGTGCACTGCTCCGACCCCGGCGCGACGCAGTGCGCGGACCCGTCGCGGCG
CATCTCGTGGGACGGCCTGCACATGACGGAGGCGGTGTACCGGATCATGGCGCGCGGCGTGCTCGACGGCCCGTTCGCCG
ACCCGCCCATCATGTCCAGATGCCACGGCTACTAGCCTACTAGCTAGCTTAAGCCAGTTTGGGATTTGCTCATTTGTTAA
TTTGCACGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis