Browse Element(s) Details


OsAffx.28905.1.S1_at

Description tigr:9635.m04494
TID=OsAffx.28905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4473010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44700Os.53916.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44700OsAffx.25220.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44710Os.26585.1.A1_at11/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44710OsAffx.28904.1.S1_at5/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44720Os.51357.1.S1_at11/117+26693218..26700576retrotransposon protein, putative, unclassified, expressed
LOC_Os07g44730OsAffx.28905.1.S1_at10/117+26701807..26703488hypothetical protein
LOC_Os07g44740Os.12190.1.S1_at11/117+26704204..2670619110 kDa chaperonin, putative, expressed
LOC_Os07g44750NANA7+26711365..26712034hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.2.S1_x_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_s_at11/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.1.S1_at10/117+26713800..26715490hypothetical protein
LOC_Os07g44760OsAffx.22026.3.S1_at9/117+26713800..26715490hypothetical protein
LOC_Os07g44760Os.52115.1.S1_at1/117+26713800..26715490hypothetical protein
LOC_Os07g44770Os.53868.1.S1_s_at11/117+26717278..26719827expressed protein
LOC_Os07g44770Os.53868.1.S1_at10/117+26717278..26719827expressed protein
LOC_Os07g44780Os.37457.1.S1_at11/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.46863.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g44780Os.20309.1.S1_at1/117+26725943..26728284GDSL-like Lipase/Acylhydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28905.1.S1_at--122--10631Chr07:26703365..26703389 (25 bp)
TTCGTCGACCGCAGGTGTGCTTCGC
LOC_Os07g44730
OsAffx.28905.1.S1_at--23--10651Chr07:26703286..26703361 (25 bp)
TTCGCTGCTTTGTCCCGATTTGTTG
LOC_Os07g44730
OsAffx.28905.1.S1_at--375--9071Chr07:26703281..26703304 (24 bp)
TGCTTTGTCCCGATTTGTTGCTGGG
LOC_Os07g44730
OsAffx.28905.1.S1_at--803--9291Chr07:26703181..26703205 (25 bp)
TCCGCGCTGCTTCCAGTTAGTACCT
LOC_Os07g44730
OsAffx.28905.1.S1_at--172--10691Chr07:26703171..26703195 (25 bp)
TTCCAGTTAGTACCTCCTGCTCCTA
LOC_Os07g44730
OsAffx.28905.1.S1_at--818--9251Chr07:26703151..26703175 (25 bp)
TCCTACTCGTTCTTTCTTGCTAAGT
LOC_Os07g44730
OsAffx.28905.1.S1_at--156--2011Chr07:26703147..26703171 (25 bp)
ACTCGTTCTTTCTTGCTAAGTGTAG
LOC_Os07g44730
OsAffx.28905.1.S1_at--643--3731NONE
CTAAGTGTAGAGTTAGTATGGCCAG
NONE
OsAffx.28905.1.S1_at--6--2831Chr07:26701862..26701886 (25 bp)
AAGTTCTAGAGGCAAGCTTCAAACC
LOC_Os07g44730
OsAffx.28905.1.S1_at--690--6191Chr07:26701854..26701878 (25 bp)
GAGGCAAGCTTCAAACCTTACGAAT
LOC_Os07g44730
OsAffx.28905.1.S1_at--648--10471Chr07:26701837..26701861 (25 bp)
TTACGAATATCTTCCAGTGATGTCA
LOC_Os07g44730
Target Sequence 
TTCGTCGACCGCAGGTGTGCTTCGCTGCTTTGTCCCGATTTGTTGCTGGGGTTCGTCGATCTGGGAGGGAAGCTACGAGA
CGACTACGTTCACCTTCGGCTCGCAAGTGCTCCACCTCCTCTGCCTCCGCGCTGCTTCCAGTTAGTACCTCCTGCTCCTA
CTCGTTCTTTCTTGCTAAGTGTAGAGTTAGTATGGCCAGGTGCAGTTCTGATGAACACCTACTTGTCTGAACATCCTGAG
ACTGTGAAGGATCATTCAATAATTGAGCTAGGATCTGGGGTTGGCATTACTGGCATATTGTGCAGCCGTTTTTGCAAAGA
AGTTGTCTTGACTGATCACAATGATGAAGTTCTAGAGGCAAGCTTCAAACCTTACGAATATCTTCCAGTGATGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis