Browse Element(s) Details


OsAffx.28904.1.S1_at

Description tigr:9635.m04492
TID=OsAffx.28904.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g447105/11CDPK-related protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44680OsAffx.16712.1.S1_at11/117+26660432..26661079hypothetical protein
LOC_Os07g44690Os.50643.2.S1_x_at11/117+26671944..26675158HSF-type DNA-binding domain containing protein, expressed
LOC_Os07g44690Os.50643.1.S1_a_at11/117+26671944..26675158HSF-type DNA-binding domain containing protein, expressed
LOC_Os07g44700Os.53916.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44700OsAffx.25220.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44710Os.26585.1.A1_at11/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44710OsAffx.28904.1.S1_at5/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44720Os.51357.1.S1_at11/117+26693218..26700576retrotransposon protein, putative, unclassified, expressed
LOC_Os07g44730OsAffx.28905.1.S1_at10/117+26701807..26703488hypothetical protein
LOC_Os07g44740Os.12190.1.S1_at11/117+26704204..2670619110 kDa chaperonin, putative, expressed
LOC_Os07g44750NANA7+26711365..26712034hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28904.1.S1_at--884--5911Chr07:26682724..26682748 (25 bp)
GAGCTTATATCAGTTCGTCTTCCTT
LOC_Os07g44710
OsAffx.28904.1.S1_at--359--251Chr07:26682718..26682742 (25 bp)
ATATCAGTTCGTCTTCCTTGCGGAA
LOC_Os07g44710
OsAffx.28904.1.S1_at--866--4671Chr07:26682486..26682723 (25 bp)
GCGGAAGTCCGCTTTGAGGGCCCTA
LOC_Os07g44710
OsAffx.28904.1.S1_at--389--6111Chr07:26682471..26682492 (22 bp)
GAGGGCCCTAGCTAAGACATTGACG
LOC_Os07g44710
OsAffx.28904.1.S1_at--403--5751Chr07:26682450..26682474 (25 bp)
GACGGCAAATCAACTGTTCTATCTA
LOC_Os07g44710
OsAffx.28904.1.S1_at--565--9331Chr07:26681292..26681314 (23 bp)
TCGCCTTCTGGTACCAATGCAACAA
NONE
OsAffx.28904.1.S1_at--1052--3831Chr07:26681264..26681288 (25 bp)
CTGCTCCTCACTGTCCATTGATGAT
NONE
OsAffx.28904.1.S1_at--394--711Chr07:26681244..26681268 (25 bp)
ATGATGGGAGAATCTGCATTTTTAC
NONE
OsAffx.28904.1.S1_at--247--2951Chr07:26681216..26681240 (25 bp)
AAGGCTGCATCTACCCAAGCATATG
NONE
OsAffx.28904.1.S1_at--1124--4951Chr07:26681198..26681222 (25 bp)
GCATATGCATATATTCATGGCGATA
NONE
OsAffx.28904.1.S1_at--239--10191Chr07:26681169..26681193 (25 bp)
TATATCACCAATGACCTTGGCCGAT
NONE
Target Sequence 
GAGCTTATATCAGTTCGTCTTCCTTGCGGAAGTCCGCTTTGAGGGCCCTAGCTAAGACATTGACGGCAAATCAACTGTTC
TATCTAAGAGAGCAATTTGAATTGTTGGGTCCAAACAAGAATGGTTATATCTCCTTGCAAAATTTGAAAACGGCCTTGGT
AAAGAATTCTACAGATGCAATGAAGGATTCTAGGGTTATTGACTTTGTTAACACGGTGTGCACTCTTCAGTACAGAAAAT
TGGATTTTGAAGAGTTCGCTGCTTCTGCCGTCAGCGTTTATCAGATGGAAGCTTTGGAAACATGGGAGCAGCACGCACGG
CGTGCATACGAGCTATTCGATAAGGAGGGCAACCGACCTATTGTAATTGAGGAGCTTGCATCGCCTTCTGGTACCAATGC
AACAATCTCTGCTCCTCACTGTCCATTGATGATGGGAGAATCTGCATTTTTACTGCAAGGCTGCATCTACCCAAGCATAT
GCATATATTCATGGCGATATGCATATATCACCAATGACCTTGGCCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis